BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitri_transcriptome.fasta
           60,261 sequences; 104,618,276 total letters



Query= Dcitr03g19820.1.1

Length=749
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcDTr01712.3Unknown protein                                           905     0.0  


>DcDTr01712.3 Unknown protein
Length=1678

 Score = 905 bits (490),  Expect = 0.0
 Identities = 494/496 (99%), Gaps = 0/496 (0%)
 Strand=Plus/Minus

Query  254  AGGTTGCACCTCACACTGGAACCTATGCTCGCGATTCTCCAGCTCAAACACCAATGAGCC  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  753  AGGTTGCACCTCACACTGGAACCTATGCTCGCGATTCTCCAGCTCAAACACCAATGAGCC  694

Query  314  TGGAATGGAAATTAAGTGCAATGTATGCAGCTATGATAACTGCAATCATTTGAATTCGTG  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  693  TGGAATGGAAATTAAGTGCAATGTATGCAGCTATGATAACTGCAATCATTTGAATTCGTG  634

Query  374  TATGCCAGAGTGGACTGATCATGAAGACGAATATAATGATGTGATAAGCAATAGAAAATA  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  633  TATGCCAGAGTGGACTGATCATGAAGACGAATATAATGATGTGATAAGCAATAGAAAATA  574

Query  434  CTCGAATGACAAGACAAGTGCAGTACGCACAGAAGACAAAATTTTCACGCTTAATGACAC  493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  573  CTCGAATGACAAGACAAGTGCAGTACGCACAGAAGACAAAATTTTCACGCTTAATGACAC  514

Query  494  TTCCATCAACATGACAACAGCAAGTGTCAACCTAACACTGACGTCAGAAAGCAATACCTC  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  TTCCATCAACATGACAACAGCAAGTGTCAACCTAACACTGACGTCAGAAAGCAATACCTC  454

Query  554  AACGCTTCGTATCATTATAACAGACTACCCGGGTCAAGTCATAGCAGATTATATGAACAG  613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  453  AACGCTTCGTATCATTATAACAGACTACCCGGGTCAAGTCATAGCAGATTATATGAACAG  394

Query  614  TTCAAACTATGATTACAATGGGAACTATACGTCTGATTTCAATTTGGACTGGCACCCTTC  673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  393  TTCAAACTATGATTACAATGGGAACTATACGTCTGATTTCAATTTGGACTGGCACCCTTC  334

Query  674  CACGGGAAATCGACTCGAATTACAGTGTCTCCTAATCATGATGGTATGGAGTGTGGTAGC  733
            ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct  333  CACGGGAAATCGACTCGAATTACAGTGTCTCCTAATCATGATGGTATTGAGTATGGTAGC  274

Query  734  TTGTAACTTTTTCTGA  749
            ||||||||||||||||
Sbjct  273  TTGTAACTTTTTCTGA  258


 Score = 455 bits (246),  Expect = 6e-127
 Identities = 246/246 (100%), Gaps = 0/246 (0%)
 Strand=Plus/Minus

Query  12    ATGCCATCTAGTTTTATCATAGCTATCTCTATTGTATTTCTATCGCGATTAAATACAGTC  71
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1351  ATGCCATCTAGTTTTATCATAGCTATCTCTATTGTATTTCTATCGCGATTAAATACAGTC  1292

Query  72    GCCTGTTTGAATTGTTACCTGTGTAATTCCTACGATAAGCAAAGTCCATTGAGGAGTGAT  131
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1291  GCCTGTTTGAATTGTTACCTGTGTAATTCCTACGATAAGCAAAGTCCATTGAGGAGTGAT  1232

Query  132   CGGAATGAGTCTTGTAATATACTCACTCCGGGTAAACAACTGGAGATCTGTCCCAAATTG  191
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1231  CGGAATGAGTCTTGTAATATACTCACTCCGGGTAAACAACTGGAGATCTGTCCCAAATTG  1172

Query  192   GGTACTCATTGCTTCACGATATGCTCCATTGATCGGATAAGGAAACTCAGATACGTGAGA  251
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1171  GGTACTCATTGCTTCACGATATGCTCCATTGATCGGATAAGGAAACTCAGATACGTGAGA  1112

Query  252   CGAGGT  257
             ||||||
Sbjct  1111  CGAGGT  1106



Lambda      K        H
    1.34    0.622     1.13 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 74506227270


  Database: Dcitri_transcriptome.fasta
    Posted date:  Apr 30, 2019 10:57 AM
  Number of letters in database: 104,618,276
  Number of sequences in database:  60,261



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5