BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Csinensis_154_v1.fa 12,574 sequences; 319,231,331 total letters Query= Untitled_sequence Length=2311 Score E Sequences producing significant alignments: (Bits) Value scaffold00004length=4155456 1371 0.0 >scaffold00004 length=4155456 Length=4155456 Score = 1371 bits (742), Expect = 0.0 Identities = 751/755 (99%), Gaps = 1/755 (0%) Strand=Plus/Minus Query 1 CTCCAGCATGGAACTCATTTTTTCCAAATCAGTCACTGGCCTAAATTCTCGCTTTTAACC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845434 CTCCAGCATGGAACTCATTTTTTCCAAATCAGTCACTGGCCTAAATTCTCGCTTTTAACC 2845375 Query 61 ACCACAGGTTTTTATTGTAAATAAGTCGAAAGCGGAGGTCTTATTTCCACTACTTCACAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845374 ACCACAGGTTTTTATTGTAAATAAGTCGAAAGCGGAGGTCTTATTTCCACTACTTCACAT 2845315 Query 121 TCACACTCCGTCGTCTCCTCACTGATCATCGGAACCGCCACCTTTTTTTTATTCTGATAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845314 TCACACTCCGTCGTCTCCTCACTGATCATCGGAACCGCCACCTTTTTTTTATTCTGATAC 2845255 Query 181 TCGAACTTTCAAACACATACACAAAAAAAAAGAAAAAATAATAATAATAATGCCTCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845254 TCGAACTTTCAAACACATACACAAAAAAAAAGAAAAAATAATAATAATAATGCCTCAAGA 2845195 Query 241 CGAGAGGCAACGATCCAAGAGCCGAGCGTCAACGTCTCGGGCGGTGGCCCGACCGCCGGC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845194 CGAGAGGCAACGATCCAAGAGCCGAGCGTCAACGTCTCGGGCGGTGGCCCGACCGCCGGC 2845135 Query 301 ACGAGCCAAAGTTCCATTGCGAAAGCTACTGAAAGTAGCCTCCGTGGCCGGCGGCATACA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845134 ACGAGCCAAAGTTCCATTGCGAAAGCTACTGAAAGTAGCCTCCGTGGCCGGCGGCATACA 2845075 Query 361 ATTCGGTTGGGCTCTACAGCTCTCTCTCCTAACTCCGTACGTGCAAGAGCTCGGAATTCC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845074 ATTCGGTTGGGCTCTACAGCTCTCTCTCCTAACTCCGTACGTGCAAGAGCTCGGAATTCC 2845015 Query 421 TCACGCTTGGGCCAGTATCATCTGGCTCTGTGGCCCGGTCTCCGGCCTCTTCGTCCAGCC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2845014 TCACGCTTGGGCCAGTATCATCTGGCTCTGTGGCCCGGTCTCCGGCCTCTTCGTCCAGCC 2844955 Query 481 TCTCGTTGGCCACTTCAGCGATCGCTGCACTAGCCGTTTTGGCCGTCGCAGACCGTTTAT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2844954 TCTCGTTGGCCACTTCAGCGATCGCTGCACTAGCCGTTTTGGCCGTCGCAGACCGTTTAT 2844895 Query 541 TGTCTGCGGTGCCATTTCGATTGCTGTCGCCGTTTTGCTAATTGGTCTTTCCGCCGATAT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2844894 TGTCTGCGGTGCCATTTCGATTGCTGTCGCCGTTTTGCTAATTGGTCTTTCCGCCGATAT 2844835 Query 601 CGGGTGGTTGCTCGGCGATAGAGGCGATTTTCGGCCGAGGGCGATCGCCGTGTTTGTGTT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2844834 CGGGTGGTTGCTCGGCGATAGAGGCGATTTTCGGCCGAGGGCGATCGCCGTGTTTGTGTT 2844775 Query 661 CGGGTTTTGGATTCTTGATGTCGCTAATAATATGACCCAAGGTCCTTGTAGAGCTCTTCT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2844774 CGGGTTTTGGATTCTTGATGTCGCTAATAATATGACCCAAGGTCCTTGTAGAGCTCTTCT 2844715 Query 721 TGCTGATCTTACGGGTATGCGTTT-TAAGTTTTAT 754 |||||||||||||||||||||| | |||||||| Sbjct 2844714 TGCTGATCTTACGGGTATGCGTATGCTAGTTTTAT 2844680 Score = 1262 bits (683), Expect = 0.0 Identities = 695/701 (99%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 757 GGCTGTTGGTAATATTCTTGGCTACGCTACTGGATCATTCAGTGGTTGGTTCAAGATTCT 816 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2843593 GGCTGTTGGTAATATTCTTGGCTATGCTACTGGATCATTCAGTGGTTGGTTCAAGATTCT 2843534 Query 817 TCCTTTTACTCTTACCTCGGCATGTAATGTTGACTGCGCCAATCTCAAGTCTGCTTTCTT 876 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2843533 TCCTTTTACTCTTACCTCGGCATGTAATGTTGACTGCGCCAATCTCAAGTCTGCTTTCTT 2843474 Query 877 TCTTGATGTTATTTTTATTGTGATCACTACCTGTATAAGCACTTCCGCAGCTCATGAAGT 936 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 2843473 TCTTGATGTTATTTTTATTGCGATCACTACCTGTATAAGCGCTTCCGCAGCTCATGAAGT 2843414 Query 937 TCCTCTAGGTTCACGTGACCAATCTGCTCCTTTTTCTGAAGAAGGGCATGAACAATCAAG 996 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2843413 TCCTCTAGGTTCACATGACCAATCTGCTCCTTTTTCTGAAGAAGGGCATGAACAATCAAG 2843354 Query 997 CGATGTCCATGAAGCTTTCCTTTGGGAACTGTTTGGAACTTTCAGATATTTCTCAGGGAC 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2843353 CGATGTCCATGAAGCTTTCCTTTGGGAACTGTTTGGAACTTTCAGATATTTCTCAGGGAC 2843294 Query 1057 TATTTGGATAATCTTGATTGTCACTGCTCTAACATGGTTGGGATGGTTTCCATTTCTTCT 1116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2843293 TATTTGGATAATCTTGATTGTCACTGCTCTAACATGGTTGGGATGGTTTCCATTTCTTCT 2843234 Query 1117 ATTTGATACTGATTGGATGGGTCGAGAGATCTACGGTGGTGAGCCAAATGAAGGGCAGAA 1176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2843233 ATTTGATACTGATTGGATGGGTCGAGAGATCTACGGTGGTGAGCCAAATGAAGGGCAGAA 2843174 Query 1177 CTATGCTACTGGTGTCCGAATGGGTGCACTTGGTTTGATGTTAAATTCAGTTGTTCTAGG 1236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2843173 CTATGCTACTGGTGTCCGAATGGGTGCACTTGGTTTGATGTTAAATTCAGTTGTTCTAGG 2843114 Query 1237 AATAACTTCCGTGCTCATGGAGAAGCTCTGCAGGAAATGGGGTGCTGGTTTTATATGGGG 1296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2843113 AATAACTTCCGTGCTCATGGAGAAGCTCTGCAGGAAATGGGGTGCTGGTTTTATATGGGG 2843054 Query 1297 AATTTCAAACATTCTCATGGCTCTTTGCTTTCTTGCTATGCTCATACTCTACTATGTGGC 1356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2843053 AATTTCAAACATTCTCATGGCTCTTTGCTTTCTTGCTATGCTCATACTCTACTATGTGGC 2842994 Query 1357 AATCCACATGGACTATAGAGGACATGATCTACCGCCAAATGGCATTGTGATAGCTGCTCT 1416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2842993 AATCCACATGGACTATAGAGGACATGATCTACCGCCAAATGGCATTGTGATAGCTGCTCT 2842934 Query 1417 GATAATCTTTACAATTCTCGGTGGTCCATTGGCGATAACTT 1457 |||||||||||||||||||||||||||||||||| ||| || Sbjct 2842933 GATAATCTTTACAATTCTCGGTGGTCCATTGGCGGTAAGTT 2842893 Score = 1077 bits (583), Expect = 0.0 Identities = 591/595 (99%), Gaps = 0/595 (0%) Strand=Plus/Minus Query 1717 AGCTGATCCTACTTTGGTTACCAAATGTGTGAGTGTCTAAATGCATCGAATTGCTTGGAA 1776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840409 AGCTGATCCTACTTTGGTTACCAAATGTGTGAGTGTCTAAATGCATCGAATTGCTTGGAA 2840350 Query 1777 GTTTTTGAAGTTTTGAGGACACTATAGCCAAATAATAAATTAAACTGGAAACAGTGAGAA 1836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840349 GTTTTTGAAGTTTTGAGGACACTATAGCCAAATAATAAATTAAACTGGAAACAGTGAGAA 2840290 Query 1837 AGTTTCTGGGAATCAAGTCATAGGCTCAAAGGGACTCTATCAACAGTGGCGCTTGTGGAC 1896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840289 AGTTTCTGGGAATCAAGTCATAGGCTCAAAGGGACTCTATCAACAGTGGCGCTTGTGGAC 2840230 Query 1897 AAAGAGAAACAAGCAACATATGTGCATAACCATAATAGGAACTTAAATGTAACATTTAAT 1956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840229 AAAGAGAAACAAGCAACATATGTGCATAACCATAATAGGAACTTAAATGTAACATTTAAT 2840170 Query 1957 TATCATTGCTACTCAATACTGCATGAGAGAGCTATCCAAAAGAGTCCAACATTTCTTTGA 2016 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840169 TATCATTGCCACTCAATACTGCATGAGAGAGCTATCCAAAAGAGTCCAACATTTCTTTGA 2840110 Query 2017 TGAAATTCATTTTCACTTCTAGAATTGCTGCGTTGTGACTCCCAAGAGTACTTACTTACC 2076 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2840109 TGAAATTCATTTTCACTTCTAGAATTGCTGCTTTGTGACTCCCAAGAGTACTTACTTACC 2840050 Query 2077 ACTCAAGAGAAGCCGCTGCCGATTTGGGATTTATTCCGCATGGAAACATCATATTTTCTG 2136 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840049 ACTCAAGATAAGCCGCTGCCGATTTGGGATTTATTCCGCATGGAAACATCATATTTTCTG 2839990 Query 2137 AAGGCAAAGTTGATTGACCCTATTGTGGTCCAATTGTGATGTGTTGGATTCTCATACATT 2196 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2839989 AAGGCAAAGTTGATTGACCCTATTGTGGTCCAATTGTGATGTGTTGGATTCTCATGCATT 2839930 Query 2197 TCGCGCCTGTAATTTGATGCATGAATGCGGTGAATTGTGCTTGGTGGCGAACTGTTACTG 2256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2839929 TCGCGCCTGTAATTTGATGCATGAATGCGGTGAATTGTGCTTGGTGGCGAACTGTTACTG 2839870 Query 2257 TGTGAGTTGCGCTGATTGAAACCCTGATGCTGACATACCTTTTATGCCCTGATTT 2311 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2839869 TGTGAGTTGCGCTGATTGAAACCCTGATGCTGACATACCTTTTATGCCCTGATTT 2839815 Score = 303 bits (164), Expect = 2e-80 Identities = 164/164 (100%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1555 ACAGATTGTGGTTTCCATGGGAAGCGGACCATGGGATCAACTCTTTGGTGGTGGAAACTC 1614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840854 ACAGATTGTGGTTTCCATGGGAAGCGGACCATGGGATCAACTCTTTGGTGGTGGAAACTC 2840795 Query 1615 ACCAGCATTTGCTGTTGGGGGAATTTCAGCCCTTGCTGGTGGACTCATAGCAATATTAGC 1674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840794 ACCAGCATTTGCTGTTGGGGGAATTTCAGCCCTTGCTGGTGGACTCATAGCAATATTAGC 2840735 Query 1675 TATTCCTCGATCTAGCGCTCAGAAGCCCAGGGCCCTCCCATGAG 1718 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2840734 TATTCCTCGATCTAGCGCTCAGAAGCCCAGGGCCCTCCCATGAG 2840691 Score = 124 bits (67), Expect = 2e-26 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1450 GATAACTTACAGTGTTCCATATGCTTTGGTTTCCATACGCACAGAGTCTTTGGGACTTGG 1509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2842592 GATAACTTACAGTGTTCCATATGCTTTGGTTTCCATACGCACAGAGTCTTTGGGACTTGG 2842533 Query 1510 CCAAGGT 1516 ||||||| Sbjct 2842532 CCAAGGT 2842526 Score = 86.1 bits (46), Expect = 9e-15 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 1513 AGGTTTATCATTGGGTGTTTTGAATCTGGCAATTGTGATCCCACAG 1558 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2842433 AGGTTTATCATTGGGTGTTTTGAATCTGGCAATTGTGATCCCACAG 2842388 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 727653775170 Database: Csinensis_154_v1.fa Posted date: Jul 13, 2015 4:43 PM Number of letters in database: 319,231,331 Number of sequences in database: 12,574 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5