BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_cds.fa
           25,292 sequences; 34,155,564 total letters



Query= XM_017447740.1

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrC002915.1.1CG30089-PA (AHRD V3.11 *-* FBpp0086421). AED 0.00     721     0.0   
DcitrC065430.1.1CG30089-PA (AHRD V3.11 *-* FBpp0086421). AED 0.29     612     6e-175


>DcitrC002915.1.1 CG30089-PA (AHRD V3.11 *-* FBpp0086421). AED 0.00
Length=2232

 Score = 721 bits (390),  Expect = 0.0
 Identities = 400/405 (99%), Gaps = 0/405 (0%)
 Strand=Plus/Plus

Query  23    GAAGATCACGACTATCGCGGCGAGGTTCAGGCTACACCCCAGAAGAGGAACCGAAAACAT  82
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1694  GAAGATCACGACTATCACGGCGAGGTTCAGGCTACACCCCAGAAGAGGAACCGAAAACAT  1753

Query  83    GTTGTGGCGTATCAATGACAATTCGGTGGTTCATCTCCATAATACTTGTGATAGGAGTAC  142
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1754  GTTGTGGCGTATCAATGACAATTCGGTGGTTCATCTCCATAATACTTGTGATAGGAGTAC  1813

Query  143   TCTGTGTTGTGATTGGCTGTATACTAGGCACTATGAACACCGGCGTACGACAGCATGTGT  202
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1814  TCTGTGTTGTGATTGGCTGTATACTAGGCACTATGAACACCGGCGTACGACAGCATGTGT  1873

Query  203   CTGTATCTCTCCTCATGATAGGCGTGGGCATCATTCTAGTGACAGTTAGCGGTTTGGCGT  262
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1874  CTGTATCTCTCCTCATGATAGGCGTGGGCATCATTCTAGTGACAGTTAGCGGTTTAGCGT  1933

Query  263   GGCGGCTCAGTGTATACAGGGACGAGTCCACGCCCACCTGGCGTATGTTACTGGGTCTGG  322
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1934  GGCGGCTCAGTGTATACAGGGACGAGTCCACGCCTACCTGGCGTATGTTACTGGGTCTGG  1993

Query  323   GCGGTAACCATAGCAACACGGGAGAGGAGGGAAGTGGAGAACCTAACAGGAGATTTGTGC  382
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1994  GCGGTAACCATAGCAACACGGGAGAGGAGGGGAGTGGAGAACCTAACAGGAGATTTGTGC  2053

Query  383   CCCGTCTCCCCCCCTCGTATGGGCGACCTCATCATCCCTATGCCG  427
             |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  2054  CCCGCCTCCCCCCCTCGTATGGGCGACCTCATCATCCCTATGCCG  2098


>DcitrC065430.1.1 CG30089-PA (AHRD V3.11 *-* FBpp0086421). AED 0.29
Length=894

 Score = 612 bits (331),  Expect = 6e-175
 Identities = 331/331 (100%), Gaps = 0/331 (0%)
 Strand=Plus/Plus

Query  97   ATGACAATTCGGTGGTTCATCTCCATAATACTTGTGATAGGAGTACTCTGTGTTGTGATT  156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACAATTCGGTGGTTCATCTCCATAATACTTGTGATAGGAGTACTCTGTGTTGTGATT  60

Query  157  GGCTGTATACTAGGCACTATGAACACCGGCGTACGACAGCATGTGTCTGTATCTCTCCTC  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGCTGTATACTAGGCACTATGAACACCGGCGTACGACAGCATGTGTCTGTATCTCTCCTC  120

Query  217  ATGATAGGCGTGGGCATCATTCTAGTGACAGTTAGCGGTTTGGCGTGGCGGCTCAGTGTA  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATGATAGGCGTGGGCATCATTCTAGTGACAGTTAGCGGTTTGGCGTGGCGGCTCAGTGTA  180

Query  277  TACAGGGACGAGTCCACGCCCACCTGGCGTATGTTACTGGGTCTGGGCGGTAACCATAGC  336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TACAGGGACGAGTCCACGCCCACCTGGCGTATGTTACTGGGTCTGGGCGGTAACCATAGC  240

Query  337  AACACGGGAGAGGAGGGAAGTGGAGAACCTAACAGGAGATTTGTGCCCCGTCTCCCCCCC  396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AACACGGGAGAGGAGGGAAGTGGAGAACCTAACAGGAGATTTGTGCCCCGTCTCCCCCCC  300

Query  397  TCGTATGGGCGACCTCATCATCCCTATGCCG  427
            |||||||||||||||||||||||||||||||
Sbjct  301  TCGTATGGGCGACCTCATCATCCCTATGCCG  331



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 13788456516


  Database: Dcitr_OGSv2.0_cds.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 34,155,564
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5