BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Cclementina_182_v1.0.cds_primaryTranscriptOnly_annot.fasta
           24,533 sequences; 30,654,468 total letters



Query= ScVcwli_2175:452901-454600

Length=1700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Ciclev10015332mATP synthase alpha/beta family protein, similar to...  143     4e-33


>Ciclev10015332m ATP synthase alpha/beta family protein, similar to AT5G08680.1
Length=1287

 Score = 143 bits (77),  Expect = 4e-33
 Identities = 121/143 (85%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  691   GCACTAGTGTACGGTCAAATGAACGAACCCCCCGGCGCCCGTGCTCGTGTGGCTCTGACT  750
             ||||| || || ||||||||||| || || ||||| || ||||||||||||| |||||||
Sbjct  883   GCACTTGTCTATGGTCAAATGAATGAGCCACCCGGTGCTCGTGCTCGTGTGGGTCTGACT  942

Query  751   GGACTGACTGTGGCTGAATATTTCCGTGATCAAGAAGGACAAGATGTGCTGCTCTTCATT  810
             || || ||||| |||||  | |||||||||   || || |||||||||||||||||||| 
Sbjct  943   GGGCTTACTGTTGCTGAGCACTTCCGTGATGCTGAGGGGCAAGATGTGCTGCTCTTCATC  1002

Query  811   GACAACATTTTCCGATTCACCCA  833
             |||||||||||||| ||||||||
Sbjct  1003  GACAACATTTTCCGTTTCACCCA  1025



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 50318914525


  Database: Cclementina_182_v1.0.cds_primaryTranscriptOnly_annot.fasta
    Posted date:  Jul 14, 2015  1:42 PM
  Number of letters in database: 30,654,468
  Number of sequences in database:  24,533



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5