BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Cclementina_182_v1.0.cds_primaryTranscriptOnly_annot.fasta
           24,533 sequences; 30,654,468 total letters



Query= ScVcwli_2175:450701-451900

Length=1200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Ciclev10015332mATP synthase alpha/beta family protein, similar to...  137     1e-31


>Ciclev10015332m ATP synthase alpha/beta family protein, similar to AT5G08680.1
Length=1287

 Score = 137 bits (74),  Expect = 1e-31
 Identities = 158/199 (79%), Gaps = 3/199 (2%)
 Strand=Plus/Plus

Query  997   TCACAGGTCGTAGATCTGCTCGCCCCCTACGCTAAG-GGAGGTAAGATCGGTCTGTTCGG  1055
             ||| ||||||| ||||| || || || ||| | ||| ||||| |||||||| || || ||
Sbjct  641   TCA-AGGTCGTTGATCTCCTTGCTCCATAC-CAAAGAGGAGGGAAGATCGGGCTTTTTGG  698

Query  1056  AGGAGCTGGAGTAGGCAAGACTGTACTTATCATGGAGCTGATCAACAACGTAGCCAAGGC  1115
              || ||||| ||||| || ||||| ||||| ||||| || || ||||| || || |||||
Sbjct  699   TGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCGAAGGC  758

Query  1116  CCATGGTGGTTACTCCGTGTTTGCCGGAGTGGGAGAGAGAACCCGTGAGGGTAATGATCT  1175
              |||||||||| ||| || ||||| || || |||||| | || ||||||||||||||  |
Sbjct  759   TCATGGTGGTTTCTCAGTTTTTGCTGGTGTTGGAGAGCGTACTCGTGAGGGTAATGACTT  818

Query  1176  GTACCACGAGATGATTGAG  1194
             |||||  || |||||||||
Sbjct  819   GTACCGGGAAATGATTGAG  837



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 35298343025


  Database: Cclementina_182_v1.0.cds_primaryTranscriptOnly_annot.fasta
    Posted date:  Jul 14, 2015  1:42 PM
  Number of letters in database: 30,654,468
  Number of sequences in database:  24,533



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5