BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM005615.1.1peritrophin D1-RA. (AHRD V3.11 *** Peritrophin-A-...  424     4e-118
DcitrM005610.1.1Unknown protein. AED 0.27                             78.7    4e-14 


>DcitrM005615.1.1 peritrophin D1-RA. (AHRD V3.11 *** Peritrophin-A-PA FBpp0077027). 
Similar to MCOT09616.0.MT. AED 0.00
Length=1104

 Score = 424 bits (229),  Expect = 4e-118
 Identities = 342/398 (86%), Gaps = 1/398 (0%)
 Strand=Plus/Minus

Query  4     TCTACAAAACAAACATACTTTTATTTGAAATCTATCTGTTGAAAAAAAAAATACTGGTAC  63
             ||||||| |||||||||| ||||||||| || ||||||||||| ||||||||||||||||
Sbjct  1073  TCTACAAGACAAACATACATTTATTTGATATTTATCTGTTGAAGAAAAAAATACTGGTAC  1014

Query  64    CCCTTTTATTGTTCAAAGCCAAAACTCTTGAACCGAGGGGAAATATTTTTGACCCTTTTT  123
              | |||||||||||||||||| ||||| ||||| |||||||||||| |||||| ||||||
Sbjct  1013  ACATTTTATTGTTCAAAGCCAGAACTCATGAACTGAGGGGAAATATATTTGACACTTTTT  954

Query  124   ACCCCTATTTACACGGTTTATTATCATGAAGAAAATGGGCCTCAAAAT-AGGGAGCTTTG  182
             || ||||||||||| |||||| |||||||  || ||| ||||||| || ||| ||||| |
Sbjct  953   ACACCTATTTACACTGTTTATGATCATGATCAATATGTGCCTCAATATTAGGTAGCTTCG  894

Query  183   ACATTTTGGGTTAATTTTTCTGATGGGGACTTTACTTTGAATTTGTTAACCTTGATTTTG  242
              ||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct  893   TCATTTTGGGTTGATTTTTCTGATGTGGACTTTACATTGAATTTGTTAACATTGATTTTG  834

Query  243   TGGGAATGTATGCTAAAGCCTTCTTTCTATTGAATGTGATTCTTTTCAGTTTTTTTCAAA  302
             | || |||||||||| || ||||||||||||| ||||||||||||||||| ||| |||  
Sbjct  833   TTGGTATGTATGCTAGAGTCTTCTTTCTATTGTATGTGATTCTTTTCAGTATTTATCAGT  774

Query  303   ATACCCCTCGGGGCCCAAGCAGGCCAAAAAAGCTTCTTCAAACAGTTTTCCTTCTCCCCC  362
             |||  |||| ||||||||||||| || | ||||||| || ||||||||||| ||||| | 
Sbjct  773   ATAGTCCTCTGGGCCCAAGCAGGTCAGAGAAGCTTCATCGAACAGTTTTCCATCTCCGCA  714

Query  363   CAAAATAAAACAAGGGGGTCCATCAACACAGGGGAACA  400
             | | || | || |||| ||||||||||||||| || ||
Sbjct  713   CGAGATGAGACGAGGGTGTCCATCAACACAGGTGATCA  676


>DcitrM005610.1.1 Unknown protein. AED 0.27
Length=2305

 Score = 78.7 bits (42),  Expect = 4e-14
 Identities = 72/87 (83%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  308   CCTCGGGGCCCAAGCAGGCCAAAAAAGCTTCTTCAAACAGTTTTCCTTCTCCCCCCAAAA  367
             |||| ||||||||||||| || | ||||||| || ||||||||||| ||||| | | | |
Sbjct  1897  CCTCTGGGCCCAAGCAGGTCAGAGAAGCTTCATCGAACAGTTTTCCATCTCCGCACGAGA  1956

Query  368   TAAAACAAGGGGGTCCATCAACACAGG  394
             | | || |||| |||||||||||||||
Sbjct  1957  TGAGACGAGGGTGTCCATCAACACAGG  1983



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 18254999280


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5