BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= 31456

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c195933/f2p2/1294isoform=c195933;full_length_coverage=2;non_full_...  1020    0.0  


>c195933/f2p2/1294 isoform=c195933;full_length_coverage=2;non_full_length_coverage=2;isoform_length=1294
Length=1294

 Score = 1020 bits (552),  Expect = 0.0
 Identities = 603/625 (96%), Gaps = 13/625 (2%)
 Strand=Plus/Plus

Query  1     TCGGTTTAGCGTCAGGCTTGTCCAGGGCAAATCTACAAATAACGCCAGAATGATTCTGTA  60
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  597   TCAGTTTAGCGTCAGGCTTGTCCAGGGCAAATCTACAAATAACGCCAGAATGATTCTGTA  656

Query  61    GCTGGCAAAATGAACTCAAGTTGAACTTGGTTATCAAGTTATTTTGAGATTTGTCTTTGT  120
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  657   GCTGGCAAAATGAACTCAAGTTGAACTTGGTTATCAAGTTATTTTGAGATTTGTTTTTGT  716

Query  121   CTGCTTAGCGTTCTCGTCTCGTACCGGTAACACATTGTCTACTTTTGTCACCTGTCTTGT  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  717   CTGCTTAGCGTTCTCGTCTCGTACCGGTAACACATTGTCTACTTTTGTCACCTGTCTTG-  775

Query  181   TTCTAGTTTCTAGTACCAGAATTCTAGTACCAGAAACAATACTTCCATACCTTCTACATT  240
             |||||||||||||||||||||       | || | ||  ||   ||||||||||||||||
Sbjct  776   TTCTAGTTTCTAGTACCAGAA-------A-CA-ATAC-TTA--GCCATACCTTCTACATT  823

Query  241   TCTAAAGTTCGCTTTACTTGTGTCACTGAAAATGGAACTTTTTAATTAGTCCTTTTGGAA  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  824   TCTAAAGTTCGCTTTACTTGTGTCACTGAAAATGGAACTTTTTAATTAGTCCTTTTGAAA  883

Query  301   ACCTGTTACTTACAGTCTCTACCAATTATTTGACATAGAAATCTACTTTGTTAAATAATG  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  884   ACCTGTTACTTACAGTCTCTACCAATTATTTGACATAGAAATCTACTTTGTTAAATAATG  943

Query  361   ATATTTGGATTGCCCTTTTGCCATTAAAGGAGGAACTGGAGAGAACCCTACAAACATCTC  420
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  944   ATATTAGGATTGCCCTTTTGCCATTAAAGGAGGAACTGGAGAGAACCCTACAAACATCTC  1003

Query  421   TAAAACTACTTGATATGTCTGTAGATAAGATACATATCTATTTGAAGAACCTGGTGTGCA  480
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1004  TAAAACTTCTTGATATGTCTGTAGATAAGATACATATCTATTTGAAGAACCTGGTGTGCA  1063

Query  481   CCTTTCACAGTTGCAATCCGAGGAACACAAGTCTAGACAAGACCCAGACGAAATTATTGC  540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1064  CCTTTCACAGTTGCAATCCGAGGAACACAAGTCTAGACAAGACCCAGACGAAATTATTGC  1123

Query  541   AAACATCAAAACATTAAAGAAAACTTGATAATTGTGTTTGCAAGCAAATTGCGTACTTGG  600
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1124  AAACATCAAAACATTAAAGAAAACTTGATAATTGTGTTTGCAAGCAAATTGCCTACTTGG  1183

Query  601   TTGGGCATATCACATTTAAATCAAA  625
             |||||||||||||||||||||||||
Sbjct  1184  TTGGGCATATCACATTTAAATCAAA  1208



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 45362299800


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5