BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitr_OGSv2.0_cds.fa 25,292 sequences; 34,155,564 total letters Query= Dcitr03g19820.1.1 Length=1250 Score E Sequences producing significant alignments: (Bits) Value DcitrC094530.1.1Collagen alpha-1(IX) chain (AHRD V3.11 *-* tr|E2B... 1755 0.0 DcitrC082755.1.1Collagen alpha-1(IX) chain (AHRD V3.11 *-* tr|E2B... 1435 0.0 >DcitrC094530.1.1 Collagen alpha-1(IX) chain (AHRD V3.11 *-* tr|E2B2M9|E2B2M9_HARSA). Similar to MCOT19868.0.CO. AED 0.07 Length=2313 Score = 1755 bits (950), Expect = 0.0 Identities = 1167/1261 (93%), Gaps = 58/1261 (5%) Strand=Plus/Plus Query 12 ATGCAACCTATCTGGACTCGTCTCCTCCCGATCATCATTTCTGTCATCTTGGGAACATCC 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCAACCTATCTGGACTCGTCTCCTCCCGATCATCATTTCTGTCATCTTGGGAACATCC 60 Query 72 TCGGGTCAGGATGACAACGACATTGCCACCTTGGTGACTGCCG----------------- 114 |||||||||||||| |||||||||||||||||||||||||||| Sbjct 61 TCGGGTCAGGATGATAACGACATTGCCACCTTGGTGACTGCCGACAATGCCGCCAATACA 120 Query 115 ----ACAATGCCGCCAATACAATCGACAATGCCGCCAATACAACGGAAGCGACAGATCTG 170 ||||||||||||||||||||||||||||||||||||||||||| ||| ||| || Sbjct 121 ATCAACAATGCCGCCAATACAATCGACAATGCCGCCAATACAACGGACACGATTGATTTG 180 Query 171 GTAGAGACATCAGTTGGTGATGAGGGAAACCAGACCAGACCAAGTGGTACCAGTGACAAC 230 |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 GTAGAGGAATCAGTTGGTGATGAGGGAAACCAGACCAGACCAACTGGTACCAGTGACAAC 240 Query 231 TCCGTCCTGCCCCTGCAGGACAGTGCGGCAGGTTATGCACCCCGCATTGCATGCGCCGAT 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCGTCCTGCCCCTGCAGGACAGTGCGGCAGGTTATGCACCCCGCATTGCATGCGCCGAT 300 Query 291 CACCGCTACCGTAGCGGCGAGGATGCGGAGGATTTCGATTTCATCCGGCACTTCCAGTTA 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CACCGCTACCGTAGCGGCGAGGATGCGGAGGATTTCGATTTCATCCGGCACTTCCAGTTA 360 Query 351 GACCGCGGGACCCGGTTTCCGGGCATATACCGGATCCGAGGTTCGAACGGGGTGCAGGTC 410 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GACCGCGGAACCCGGTTTCCGGGCATATACCGGATCCGAGGTTCGAACGGGGTGCAGGTC 420 Query 411 GCGTACCGACTGATGGAGACTGTGAGAGACCTGGAAATTCCAGCCTGGCAAATGTTCCCG 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCGTACCGACTGATGGAGACTGTGAGAGACCTGGAAATTCCAGCCTGGCAAATGTTCCCG 480 Query 471 TACGGGGTGCCTGCATCCTTCACCTTCCTCTGCACCTACCGCACTCGGCAACCTATCCGT 530 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 481 TACGGGGTGCCCGCATCCTTCACCTTCCTCTGCACCTACCGCACCCGGCAACCTATCCGT 540 Query 531 TATCCATGGCGGTACCTAGTCATTCAGGGCCCACATGGGAGACCCTCCCTGGAGATATCC 590 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 541 TATCCATGGCGGTACCTAGTCATTCAGGACCCACATGGGAGACCCTCCCTGGAGATATCC 600 Query 591 GTTGATCCGGAGGCACGCTGCGTTAGACTGCTGATGCCGCATGTGTTCAATCGAGCGATT 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 601 GTTGATCCGGAGGCACGCTGCGTTAGACTGCTGATGCCGCATGTGTTCAATCGAGCCATT 660 Query 651 GTTTTTGACGGAGTCCCGGCTAGTCTATTCGATCACAACTGGCACAAGGTGCAAATCTCA 710 || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 661 GTCTTTGACGGAGTCCCGGCCAGTCTATTCGATCACAACTGGCACAAGGTGCAACTCTCA 720 Query 711 GTGTCCAACTATCAGGTCCGATTGTTCATCGATTGTCAAGAACATCCTCGCAGGTCGGAG 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GTGTCCAACTATCAGGTCCGATTGTTCATCGATTGTCAAGAACATCCTCGCAGGTCGGAG 780 Query 771 TACGGTTTGAATCAGTATTTCAAAGGTGCCAACGCTGTCAATGCAACCGGCTCCATCGGA 830 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 781 TACGGTTTGAATCAGTACTTCAAAGGTGCCAACGCTGTCAATGCAACCGGGTCCATCGGA 840 Query 831 CTGATGATCTCCAATACAAGAGAAACTTTGCCTGTTGACCTCCAATGGATGAGTATCAGT 890 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CTGATGAACTCCAATACAAGAGAAACTTTGCCTGTTGACCTCCAATGGATGAGTATCAGT 900 Query 891 TGTGACCCAAACCGACCTCTACGAGAGCAATGTGAAGAGATCCCCAGAGCCTCTCACCAT 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TGTGACCCAAACCGACCTCTACGAGAGCAATGTGAAGAGATCCCCAGAGCCTCTCACCAT 960 Query 951 CCATATCCACAGCCTCCATCATATTCTCAACCATCTGCATACCCTCAGTCTCCTTCCATC 1010 ||||||||||| | | | ||| | |||| |||| || | | || Sbjct 961 CCATATCCACA-----------A--C-C-TCCA--T-CATATTCTCA---ACCAT-CTTC 998 Query 1011 AAAGGACCTCCGGCATACCCTCCATCTTCCGTCAAAGGTCCTCAAACATACCC-CCACCT 1069 | | ||| | | | || | ||||| ||||||| |||| ||||||| ||| | Sbjct 999 ATA--CCCT-CAG--T---CT-C--CTTCCATCAAAGGACCTCCGGCATACCCTCCA--T 1045 Query 1070 CCTTCCGTCAAAGGTCCTTCAGCGGTCATTATCCCCATTAACCCGTGTATCAGCAACTGT 1129 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 -CTTCCGTCAAAGGTCCTTCAGCGGTCATTATCCCCATTAACCCGTGTATCAGCAACTGT 1104 Query 1130 CCTCCACCTAATCCTGGTATCCCAGGACCCAAGGGGGATAAAGGGGAACCTCAACCACCC 1189 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1105 CCTCCACCTATTTCTGGTATCCCAGGACCCAAGGGGGATAAAGGGGAACCTCAACCACCC 1164 Query 1190 GCCCTTAGAGGCTACCCTCCCGAGAAAGGAGAGAAGGGACAAAAAGGAGATTCCGTGGTG 1249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1165 GCCCTTAGAGGCTACCCTCCCGAGAAAGGAGAGAAGGGACAAAAAGGAGATTCCGTGGTG 1224 Query 1250 A 1250 | Sbjct 1225 A 1225 >DcitrC082755.1.1 Collagen alpha-1(IX) chain (AHRD V3.11 *-* tr|E2B2M9|E2B2M9_HARSA). Similar to MCOT19868.0.CO. AED 0.04 Length=1863 Score = 1435 bits (777), Expect = 0.0 Identities = 812/829 (98%), Gaps = 1/829 (0%) Strand=Plus/Plus Query 423 ATGGAGACTGTGAGAGACCTGGAAATTCCAGCCTGGCAAATGTTCCCGTACGGGGTGCCT 482 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGGAGACTGTGAGAGACCTGGAAATTCCAGCCTGGCAAATGTTCCCATACGGGGTGCCC 60 Query 483 GCATCCTTCACCTTCCTCTGCACCTACCGCACTCGGCAACCTATCCGTTATCCATGGCGG 542 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 GCATCCTTCACCTTCCTCTGCACCTACCGCACCCGGCAACCTATCCGTTATCCATGGCGG 120 Query 543 TACCTAGTCATTCAGGGCCCACATGGGAGACCCTCCCTGGAGATATCCGTTGATCCGGAG 602 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TACCTAGTCATTCAGGACCCACATGGGAGACCCTCCCTGGAGATATCCGTTGATCCGGAG 180 Query 603 GCACGCTGCGTTAGACTGCTGATGCCGCATGTGTTCAATCGAGCGATTGTTTTTGACGGA 662 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 GCACGCTGCGTTAGACTGCTGATGCCGCATGTGTTCAATCGAGCCATTGTTTTTGACGGA 240 Query 663 GTCCCGGCTAGTCTATTCGATCACAACTGGCACAAGGTGCAAATCTCAGTGTCCAACTAT 722 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 241 GTCCCGGCCAGTCTATTCGATCACAACTGGCACAAGGTGCAACTCTCAGTGTCCAACTAT 300 Query 723 CAGGTCCGATTGTTCATCGATTGTCAAGAACATCCTCGCAGGTCGGAGTACGGTTTGAAT 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAGGTCCGATTGTTCATCGATTGTCAAGAACATCCTCGCAGGTCGGAGTACGGTTTGAAT 360 Query 783 CAGTATTTCAAAGGTGCCAACGCTGTCAATGCAACCGGCTCCATCGGACTGATGATCTCC 842 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 361 CAGTACTTCAAAGGTGCCAACGCTGTCAATGCAACCGGGTCCATCGGACTGATGAACTCC 420 Query 843 AATACAAGAGAAACTTTGCCTGTTGACCTCCAATGGATGAGTATCAGTTGTGACCCAAAC 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AATACAAGAGAAACTTTGCCTGTTGACCTCCAATGGATGAGTATCAGTTGTGACCCAAAC 480 Query 903 CGACCTCTACGAGAGCAATGTGAAGAGATCCCCAGAGCCTCTCACCATCCATATCCACAG 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGACCTCTACGAGAGCAATGTGAAGAGATCCCCAGAGCCTCTCACCATCCATATCCACAG 540 Query 963 CCTCCATCATATTCTCAACCATCTGCATACCCTCAGTCTCCTTCCATCAAAGGACCTCCG 1022 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 541 CCTCCATCATATTCTCAACCATCTTCATACCCTCAGTCTCCTTCCATCAAAGGACCTCCG 600 Query 1023 GCATACCCTCCATCTTCCGTCAAAGGTCCTCAAACATA-CCCCCACCTCCTTCCGTCAAA 1081 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 601 GCATACCCTCCATCTTCCGTTAAAGGTCCTCAAACATACCCCCCACCTCCTTCCGTCAAA 660 Query 1082 GGTCCTTCAGCGGTCATTATCCCCATTAACCCGTGTATCAGCAACTGTCCTCCACCTAAT 1141 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 661 GGCCCTTCAGCGGTCATTATCCCCATTAATCCGTGTATCAGCAACTGTCCTCCACCTATT 720 Query 1142 CCTGGTATCCCAGGACCCAAGGGGGATAAAGGGGAACCTCAACCACCCGCCCTTAGAGGC 1201 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 721 CCTGGTATCCCAGGACCCAAGGGGGATAAAGGGGAACCTCAACCGCCCGCCCTTAGAGGC 780 Query 1202 TACCCTCCCGAGAAAGGAGAGAAGGGACAAAAAGGAGATTCCGTGGTGA 1250 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TACCCTCCCGAGAAAGGAGAGAAGGGACAAAAAGGAGATTCCGTGGTGA 829 Lambda K H 1.34 0.622 1.13 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41065998400 Database: Dcitr_OGSv2.0_cds.fa Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 34,155,564 Number of sequences in database: 25,292 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5