BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= Untitled_sequence

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c230096/f2p8/1889isoform=c230096;full_length_coverage=2;non_full_...  291     5e-78
c229769/f4p8/1970isoform=c229769;full_length_coverage=4;non_full_...  291     5e-78


>c230096/f2p8/1889 isoform=c230096;full_length_coverage=2;non_full_length_coverage=8;isoform_length=1889
Length=1889

 Score = 291 bits (157),  Expect = 5e-78
 Identities = 159/160 (99%), Gaps = 0/160 (0%)
 Strand=Plus/Minus

Query  1     GTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACC  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1376  GTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACC  1317

Query  61    TCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1316  TCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCA  1257

Query  121   CTCAACAATAAACACCTCTCATCTCCTCTTGCTCATGAAA  160
             ||||||||||||||||||||||||||||||||||||| ||
Sbjct  1256  CTCAACAATAAACACCTCTCATCTCCTCTTGCTCATGTAA  1217


>c229769/f4p8/1970 isoform=c229769;full_length_coverage=4;non_full_length_coverage=8;isoform_length=1970
Length=1970

 Score = 291 bits (157),  Expect = 5e-78
 Identities = 159/160 (99%), Gaps = 0/160 (0%)
 Strand=Plus/Minus

Query  1     GTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACC  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1456  GTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACC  1397

Query  61    TCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1396  TCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCA  1337

Query  121   CTCAACAATAAACACCTCTCATCTCCTCTTGCTCATGAAA  160
             ||||||||||||||||||||||||||||||||||||| ||
Sbjct  1336  CTCAACAATAAACACCTCTCATCTCCTCTTGCTCATGTAA  1297



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 22378734568


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5