BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitri_transcriptome.fasta
           60,261 sequences; 104,618,276 total letters



Query= Untitled_sequence

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcDTr00929.6Longitudinals lacking protein, isoforms H/M/V             427     4e-119


>DcDTr00929.6 Longitudinals lacking protein, isoforms H/M/V
Length=1341

 Score = 427 bits (231),  Expect = 4e-119
 Identities = 231/231 (100%), Gaps = 0/231 (0%)
 Strand=Plus/Plus

Query  1    GATGTCACTTTAGCTTGTGACGGCAAAAGCTTGAAAGCTCATCGGGTTGTATTGTCGGCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  768  GATGTCACTTTAGCTTGTGACGGCAAAAGCTTGAAAGCTCATCGGGTTGTATTGTCGGCA  827

Query  61   TGTAGTCCATATTTCAGGGAATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  828  TGTAGTCCATATTTCAGGGAATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTT  887

Query  121  CTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  CTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAA  947

Query  181  GTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGACTGCAGAAGTG  231
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  948  GTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGACTGCAGAAGTG  998



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 21356606484


  Database: Dcitri_transcriptome.fasta
    Posted date:  Apr 30, 2019 10:57 AM
  Number of letters in database: 104,618,276
  Number of sequences in database:  60,261



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5