BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= 457

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c62278/f3p4/1512isoform=c62278;full_length_coverage=3;non_full_le...  704     0.0  


>c62278/f3p4/1512 isoform=c62278;full_length_coverage=3;non_full_length_coverage=4;isoform_length=1512
Length=1512

 Score = 704 bits (381),  Expect = 0.0
 Identities = 397/405 (98%), Gaps = 0/405 (0%)
 Strand=Plus/Plus

Query  1     ATGAACCATTTTGAAATATTGAACTGCAATGTGAACTCTACTCTAGAAGAAATCAAAGAA  60
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  986   ATGAATCATTTTGAAATATTGAACTGCAATGTGAACTCTACTCTAGAAGAAATCAAAGAA  1045

Query  61    AACTACAAGAGCTTAAGCCTAAAATATCATCCTGATAAAAACAGTGAACATCAAGAAACG  120
             ||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||| |
Sbjct  1046  AACTACAAGAGCTTAATTCTAAAATATCATCCTGATAAAAACGGTGAATATCAAGAAATG  1105

Query  121   TTTTTGAAAATCAATGAGGCATGGAACATTCTCAAGGATGAAAAGGAAAGGAAATTGTAT  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1106  TTTTTGAAAATCAATGAGGCATGGAACATTCTCAAGGATGAAAAGGAAAGGAAATTGTAT  1165

Query  181   GAGAGTCAGTTATTATCCCAGCAACAGACACATATGAACATTTACAAGAGTGTAAGCTTG  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1166  GAGAGTCAGTTATTATCCCAGCAACAGACACATATGAACATTTACAAGAGTGTAAGCTTG  1225

Query  241   TCAGATATGGAACATAAGGGGGAGTCTCAGATGTTTACTTATCCTTGCAGGTGTGGTGCT  300
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1226  TCAGATATGGAACATAAGGGAGAGTCTCAGATGTTTACTTATCCTTGCAGGTGTGGTGCT  1285

Query  301   GAGTTTTGTATTGAAGAACAAGATACTGAGGGTGATAGTAGTGATGACAATATCCTCATA  360
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1286  GAGTTTTGTATTGAAGAACAAGATACTGAGGGTGATGGTAGTGATGACAATATCCTCATA  1345

Query  361   GCTTGTGATACATGTTCCTTACTCCTAGAAATCACTGCAAGGTGA  405
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1346  GCTTGTGATACATGTTCCTTACTCCTAGAAATCACTGCAAGGTGA  1390



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 28729456540


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5