BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM023800.1.1Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A08...  556     3e-158
DcitrM076455.1.1Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A29...  311     3e-84 
DcitrM023795.1.1Broad-complex (AHRD V3.11 *-* tr|U3U9E0|U3U9E0_PS...  305     1e-82 


>DcitrM023800.1.1 Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A088FQM8_DIPPU). 
AED 0.01
Length=1863

 Score = 556 bits (301),  Expect = 3e-158
 Identities = 301/301 (100%), Gaps = 0/301 (0%)
 Strand=Plus/Plus

Query  1    CTCAGCTTTTGAAAATCTCAGGGACGATGAAGATTTCATAGATGTCACTTTAGCTTGTGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  CTCAGCTTTTGAAAATCTCAGGGACGATGAAGATTTCATAGATGTCACTTTAGCTTGTGA  377

Query  61   CGGCAAAAGCTTGAAAGCTCATCGGGTTGTATTGTCGGCATGTAGTCCATATTTCAGGGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  378  CGGCAAAAGCTTGAAAGCTCATCGGGTTGTATTGTCGGCATGTAGTCCATATTTCAGGGA  437

Query  121  ATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  ATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGA  497

Query  181  AGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  498  AGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAA  557

Query  241  TCTAACTTCGTTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  558  TCTAACTTCGTTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAG  617

Query  301  T  301
            |
Sbjct  618  T  618


>DcitrM076455.1.1 Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A292GCW5_SCHGR). 
Similar to MCOT04683.2.CT XP_017300340.1. AED 0.36
Length=591

 Score = 311 bits (168),  Expect = 3e-84
 Identities = 170/171 (99%), Gaps = 0/171 (0%)
 Strand=Plus/Plus

Query  131  ACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCAT  190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCAT  60

Query  191  GCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCG  250
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCCCTTGTAGAATTCATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCG  120

Query  251  TTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGT  301
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGT  171


>DcitrM023795.1.1 Broad-complex (AHRD V3.11 *-* tr|U3U9E0|U3U9E0_PSAHI). AED 0.22
Length=390

 Score = 305 bits (165),  Expect = 1e-82
 Identities = 170/172 (99%), Gaps = 1/172 (1%)
 Strand=Plus/Plus

Query  130  GACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCA  189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  GACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCA  251

Query  190  TGCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTC  249
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  252  TGCCCTTGTAGAATTCATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTC  311

Query  250  GTTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGT  301
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  312  GTTTCT-AAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGT  362


 Score = 152 bits (82),  Expect = 2e-36
 Identities = 84/85 (99%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  1    CTCAGCTTTTGAAAATCTCAGGGACGATGAAGATTTCATAGATGTCACTTTAGCTTGTGA  60
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  108  CTCAGCTTTCGAAAATCTCAGGGACGATGAAGATTTCATAGATGTCACTTTAGCTTGTGA  167

Query  61   CGGCAAAAGCTTGAAAGCTCATCGG  85
            |||||||||||||||||||||||||
Sbjct  168  CGGCAAAAGCTTGAAAGCTCATCGG  192



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 13448496810


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5