BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM005835.1.1Phosphoenolpyruvate carboxykinase (AHRD V3.11 ***...  307     7e-83
DcitrM005805.1.1Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-*...  289     2e-77


>DcitrM005835.1.1 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *** tr|T1PGY2|T1PGY2_MUSDO). 
Similar to MCOT03557.0.CO XP_008472349.1. AED 
0.19| InterPro:IPR035077,Pfam:PF00821| GO:0004611,GO:0006094
Length=1750

 Score = 307 bits (166),  Expect = 7e-83
 Identities = 310/381 (81%), Gaps = 4/381 (1%)
 Strand=Plus/Minus

Query  223   AATTTGGTTTCGGGATTGATTCCCCCCCCAAAGAATGATACAATTTAACCCGCTGCCCAA  282
             |||||| |||||| ||||| || | || || || ||||||| | || | |||||| |  |
Sbjct  1589  AATTTGTTTTCGGAATTGAATCTCTCCACAGAGGATGATACGACTTGAGCCGCTGTCGCA  1530

Query  283   TTCCGGTAATTTCAGCATGAATGGCGGGGGGCGGGCCAAACCCAACTTGATCATGGAAGT  342
              |||||  ||||||||||||||||| || ||| || || | || |||||||||| |||||
Sbjct  1529  GTCCGGATATTTCAGCATGAATGGCAGGTGGCAGGTCAGAGCCGACTTGATCATTGAAGT  1470

Query  343   ACTTCCCAATAGCATTTAGCCCCTGTCCCCAAAAGCCCTTGCCGATGTAAAAAAGTTTTT  402
             ||||| |||||||||||||| ||||| |||| ||| ||||| ||||||| || |||| ||
Sbjct  1469  ACTTCTCAATAGCATTTAGCTCCTGTTCCCAGAAGTCCTTGTCGATGTAGAAGAGTTCTT  1410

Query  403   TCAAATTGACGTTAAGGTTCGGTTTGTCTTCTTCGAAAAAACCGGAGAAATTGATTACTT  462
             ||| ||||||||| |||||||||||||| |||||| | | | ||| || |||||| || |
Sbjct  1409  TCAGATTGACGTTGAGGTTCGGTTTGTCGTCTTCGTAGAGATCGGTGAGATTGATAACGT  1350

Query  463   TATGGGGGTAATCGGGAATGAAACCTATGGGGAATAACCAACCATTGGTTTTGTCCCCTT  522
             ||||| |||||||||| ||| |||| |||||| | || | || |  |||||||| ||| |
Sbjct  1349  TATGGTGGTAATCGGGGATGTAACCGATGGGGGAGAAGCGACGAACGGTTTTGTTCCCGT  1290

Query  523   TGA-TC-TTGGAAAATTCCAATGGAAAACGC-AATTTTGCCTCCAACCCCGGGCCACATG  579
             |||  | |||||||| |||| | || ||||| ||| ||| |||||| |||||||||||||
Sbjct  1289  TGACACGTTGGAAAA-TCCAGTCGAGAACGCGAATGTTGTCTCCAAACCCGGGCCACATG  1231

Query  580   AATTTCCCTTCTTTGTCCTTT  600
             |||||||| ||||||||||||
Sbjct  1230  AATTTCCCATCTTTGTCCTTT  1210


>DcitrM005805.1.1 Phosphoenolpyruvate carboxykinase (AHRD V3.11 *-* tr|T1PGY2|T1PGY2_MUSDO). 
AED 0.10
Length=4552

 Score = 289 bits (156),  Expect = 2e-77
 Identities = 266/320 (83%), Gaps = 4/320 (1%)
 Strand=Plus/Minus

Query  284   TCCGGTAATTTCAGCATGAATGGCGGGGGGCGGGCCAAACCCAACTTGATCATGGAAGTA  343
             |||||  ||||||||||||||||| || ||| || || | || |||||||||| ||||||
Sbjct  1677  TCCGGATATTTCAGCATGAATGGCAGGTGGCAGGTCAGAGCCGACTTGATCATTGAAGTA  1618

Query  344   CTTCCCAATAGCATTTAGCCCCTGTCCCCAAAAGCCCTTGCCGATGTAAAAAAGTTTTTT  403
             |||| |||||||||||||| ||||| |||| ||| ||||| ||||||| || |||| |||
Sbjct  1617  CTTCTCAATAGCATTTAGCTCCTGTTCCCAGAAGTCCTTGTCGATGTAGAAGAGTTCTTT  1558

Query  404   CAAATTGACGTTAAGGTTCGGTTTGTCTTCTTCGAAAAAACCGGAGAAATTGATTACTTT  463
             || ||||||||| |||||||||||||| |||||| | | | ||| || |||||| || ||
Sbjct  1557  CAGATTGACGTTGAGGTTCGGTTTGTCGTCTTCGTAGAGATCGGTGAGATTGATAACGTT  1498

Query  464   ATGGGGGTAATCGGGAATGAAACCTATGGGGAATAACCAACCATTGGTTTTGTCCCCTTT  523
             |||| |||||||||||||| |||| |||||| | || | || |  |||||||| ||| ||
Sbjct  1497  ATGGTGGTAATCGGGAATGTAACCGATGGGGGAGAAGCGACGAACGGTTTTGTTCCCGTT  1438

Query  524   GA-TC-TTGGAAAATTCCAATGGAAAACGC-AATTTTGCCTCCAACCCCGGGCCACATGA  580
             ||  | |||||||| |||| | || ||||| ||| ||| |||||| ||||||||||||||
Sbjct  1437  GACACGTTGGAAAA-TCCAGTCGAGAACGCGAATGTTGTCTCCAAACCCGGGCCACATGA  1379

Query  581   ATTTCCCTTCTTTGTCCTTT  600
             ||||||| ||||||||||||
Sbjct  1378  ATTTCCCATCTTTGTCCTTT  1359



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 27902011850


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5