BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Diaci_v2.0.ref.fasta
           1,906 sequences; 498,892,910 total letters



Query= Untitled_sequence

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

ScVcwli_675                                                           990     0.0  


>ScVcwli_675 
Length=717261

 Score = 990 bits (536),  Expect = 0.0
 Identities = 536/536 (100%), Gaps = 0/536 (0%)
 Strand=Plus/Minus

Query  1       TCGAAAAAAAAGGTCACTTGAAAAAGTGAAGTAGTGAAGTGATTTTGGATTTTTCCTTCT  60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555924  TCGAAAAAAAAGGTCACTTGAAAAAGTGAAGTAGTGAAGTGATTTTGGATTTTTCCTTCT  555865

Query  61      AATTTTACTCTTAAAACTTCTAATTTAACTATTGTTTCGTGAAAACCCCATCATGTCTCT  120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555864  AATTTTACTCTTAAAACTTCTAATTTAACTATTGTTTCGTGAAAACCCCATCATGTCTCT  555805

Query  121     GGGAAGAGCCTCTCGTCTGTTACCCCTCATGGAGAACGTGATCGTCCCTCACAGAAACTA  180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555804  GGGAAGAGCCTCTCGTCTGTTACCCCTCATGGAGAACGTGATCGTCCCTCACAGAAACTA  555745

Query  181     CCGTCACGTCGTCAGTGGACCTCCCCTACGTAAGACCTCTACCACCGAGATAATAGTCCA  240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555744  CCGTCACGTCGTCAGTGGACCTCCCCTACGTAAGACCTCTACCACCGAGATAATAGTCCA  555685

Query  241     TGGTGCTGTCATGAGTGTCATGGCACTGTCCATCCCTGCATGGGTTCTGTACCATCTGAA  300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555684  TGGTGCTGTCATGAGTGTCATGGCACTGTCCATCCCTGCATGGGTTCTGTACCATCTGAA  555625

Query  301     GGAGTACCAAGGCAGAGCATAAGAAGTCATCACCTCCGTTATTCTGTACAAATGTAGCAT  360
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555624  GGAGTACCAAGGCAGAGCATAAGAAGTCATCACCTCCGTTATTCTGTACAAATGTAGCAT  555565

Query  361     TAAAGTTTTGTATAAAAACTACAGGCACTCCTCACAAGAGATTTAAACCGAGATAGCAAG  420
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555564  TAAAGTTTTGTATAAAAACTACAGGCACTCCTCACAAGAGATTTAAACCGAGATAGCAAG  555505

Query  421     GAATCATCTCTTGAGTCTTGGTAACCATTGCTTCTGTGATAAGCCTAAACCTTGAATGTT  480
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555504  GAATCATCTCTTGAGTCTTGGTAACCATTGCTTCTGTGATAAGCCTAAACCTTGAATGTT  555445

Query  481     TGAACAACTTCAGAGTCAAACAGTTGCCCCATTAAGCTTAAAATAATCCTTGCCCC  536
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555444  TGAACAACTTCAGAGTCAAACAGTTGCCCCATTAAGCTTAAAATAATCCTTGCCCC  555389


 Score = 765 bits (414),  Expect = 0.0
 Identities = 449/465 (97%), Gaps = 7/465 (2%)
 Strand=Plus/Plus

Query  77      CTTCTAATTTAACTATTGTTTCGTGAAAACCCCATCATGTCTCTGGGAAGAGCCTCTCGT  136
               |||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||| 
Sbjct  532222  CTTCTAATTTTACCATTGTTTTGTGAAAACTCCATCATGTCTCTGGGAAGAGCCTCTCGC  532281

Query  137     CTGTTACCCCTCATGGAGAACGTGATCGTCCCTCACAGAAACTACCGTCACGTCGTCAGT  196
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  532282  CTGTTACCCCTCATGGAGAACGTGATCGTCCCTCACAGAAACTACCGTCACGTCGTCAGT  532341

Query  197     GGACCTCCCCTACGTAAGACCTCTACCACCGAGATAATAGTCCATGGTGCTGTCATGAGT  256
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  532342  GGACCTCCCCTACGTAAGACCTCTACCACCGAGATAATAGTCCATGGTGCTGTCATGAGT  532401

Query  257     GTCATGGCACTGTCCATCCCTGCATGGGTTCTGTACCATCTGAAGGAGTACCAAGGCAGA  316
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  532402  GTCATGGCACTGTCCATCCCTGCATGGGTTCTGTACCATCTGAAGGAGTACCAAGGCAGA  532461

Query  317     GCATAAGAAGTCATCACCTCCGTTATTCTGTACAAATGTAGCATT----AAAGTTTTGTA  372
               ||||||||| |||||||||||||||||||||||||||||||||||    |||||||||  
Sbjct  532462  GCATAAGAATTCATCACCTCCGTTATTCTGTACAAATGTAGCATTTGGTAAAGTTTTGN-  532520

Query  373     TAAAAACTACAGGCACTCCTCACAAGAGATTTAAACCGAGATAGCAAGGAATCA-TCTCT  431
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  532521  -AAAAACTACAGGCACTCCTCACAAGAGATTTAAACCGAGATAGCAAGAAATCATTCTCT  532579

Query  432     TGAGTCTTGGTAACCATTGCTTCTGTGATAAGCCTAAACCTTGAATGTTTGAACAACTTC  491
               |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  532580  TGAGTCTTGGTAACCACTGCTTCTGTGATAAGCCTAAACCTTGAATGTTTGAACAACTTC  532639

Query  492     AGAGTCAAACAGTTGCCCCATTAAGCTTAAAATAATCCTTGCCCC  536
               |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  532640  AGAGTCAAACAGTTGCCCCATTAAGCTTAAAATAATCCTTGCCCC  532684



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 253910297032


  Database: Diaci_v2.0.ref.fasta
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 498,892,910
  Number of sequences in database:  1,906



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5