BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitri_transcriptome.fasta 60,261 sequences; 104,618,276 total letters Query= RpSP17.8 Length=1061 Score E Sequences producing significant alignments: (Bits) Value DcDTi07679.1Unknown protein 789 0.0 DcDTr18756.1Unknown protein 198 2e-49 DcDTi12065.9Unknown protein 113 6e-24 DcDTi10575.4Unknown protein 113 6e-24 DcDTi02589.9DNA repair protein RAD50 113 6e-24 DcDTr07113.1Unknown protein 108 3e-22 DcDTr03200.2Alpha-tocopherol transfer protein-like 108 3e-22 DcDTi02589.3DNA repair protein RAD50 108 3e-22 DcDTi00474.3RNA-directed DNA polymerase from mobile element jockey 108 3e-22 DcDTr06303.1Unknown protein 100 5e-20 DcDTr35392.1Unknown protein 76.8 8e-13 DcDTi06391.6Unknown protein 75.0 3e-12 DcDTi00474.4RNA-directed DNA polymerase from mobile element jockey 73.1 1e-11 DcDTr11052.1Unknown protein 71.3 4e-11 >DcDTi07679.1 Unknown protein Length=1205 Score = 789 bits (427), Expect = 0.0 Identities = 537/586 (92%), Gaps = 24/586 (4%) Strand=Plus/Plus Query 150 AGTTGTTTCAACGGTACTTATTGTTTAATGAGCGGTACTAAATTGTTACGTGCGATAATT 209 |||| |||||||||||||||||||||| | | ||||||||||||||||||||| |||||| Sbjct 1 AGTT-TTTCAACGGTACTTATTGTTTACTAAACGGTACTAAATTGTTACGTGCTATAATT 59 Query 210 AAACTGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCT 269 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 60 AAACTGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAGCT-CCATCT 118 Query 270 GTTGCATAGTCTCTTCATCTTTCGGCAACGGATTCACATATCCCTAATACGCCATCGGAG 329 ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| | Sbjct 119 GTTGCTTAGTCTCTTCATCTCTCGGCAA-GGATTCACATATCCCTAATACGCCATCG--G 175 Query 330 TGCGTGAGTGATAATTAACCTGCCCGTCACCGTGTCTGAGTCCCGCTCTAAAATGCAACC 389 ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| Sbjct 176 TGCGTGAGTGATAATTAAC-TGCCC-TCACCGTGTCTGAGTCCCGCTATAAAATGCAACC 233 Query 390 AACCGTACAACCATTTCTCCTCGCGTACTGCGCTCTCCTGGCCGCCTGTCACGGCCACAT 449 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 AACCGTACAGCT-TTTCTCCTCGCGTACTGCGCTCTCCTGGCCGCCTGTCACGGCCACAT 292 Query 450 CGGTCTCAGCTACCGCGTCACCCTCTACGCCGGGTCAGAGCACCTGGGCCGCCGTCTCTA 509 ||| | ||||||||||||||||||||||||||||||||| || | |||||||||||||| Sbjct 293 CGGCC-CAGCTACCGCGTCACCCTCTACGCCGGGTCAGAA-AC-T-GGCCGCCGTCTCTA 348 Query 510 CCTGGAAGGCAACTCGTGTCAAAATTTGCCGCGTCTAGAAGATCGCGTCGCGTCAATCAA 569 |||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||| | Sbjct 349 CCTGGAAGGCAACTCGTGTCAAAATT-GCCG--TCTAGAAGATC-CGTT-CGTCAATC-A 402 Query 570 CACCCACGATACCTGTGTGCGGCTGTATGAAGATAGACTCTGCTCCGGCCGGATGCTGCA 629 |||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 403 CACCCATGATACCTGTGT--GGCTGTATGAAGATAGACTCTGCTCCGGCCGAATGCTGCA 460 Query 630 AGCGGACAGATTTTCCACGTTTGCCCGTAATTTGCGCCAGGTGGGGTTCAGGGATATAAC 689 |||||||||||| | ||||||||| | |||||||||||||||||||| ||||||||| Sbjct 461 AGCGGACAGATT--C-ACGTTTGCCA-TGATTTGCGCCAGGTGGGGTTCGCGGATATAAC 516 Query 690 GTCTTCTGTTGGACCTTGTGTGGATAACCCGTACGGCCCTAACCCT 735 |||||||||||||||||||| ||||||||| || ||| |||||| Sbjct 517 GTCTTCTGTTGGACCTTGTGAGGATAACCCCAACCCCCCCAACCCT 562 >DcDTr18756.1 Unknown protein Length=365 Score = 198 bits (107), Expect = 2e-49 Identities = 191/233 (82%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 487 GAGCACCTGGGCCGCCGTCTCTACCTGGAAGGCAACTCGTGTCAAAATTTGCCGCGTCTA 546 ||||| || |||||| | || | |||| |||||||| |||| |||||| | |||| Sbjct 365 GAGCAACTCGGCCGCTCTATCGATCTGGCAGGCAACTTGTGTATAAATTTACAATATCTA 306 Query 547 GAAGATCGCGTCGCGTCAATCAACACCCACGATACCTGTGTGCGGCTGTATGAAGATAGA 606 ||| | | || |||||||||||||| |||||||||||| ||||||||| ||| Sbjct 305 GAAAAACATATCAAATCAATCAACACCCATGATACCTGTGTGAAGCTGTATGAGAATAAG 246 Query 607 CTCTGCTCCGGCCGGATGCTGCAAGCGGACAGATTTTCCACGTTTGCCCGTAATTTGCGC 666 |||||||||||||||||||| |||||||| || ||| ||||||| |||| |||||||| Sbjct 245 TTCTGCTCCGGCCGGATGCTGAAAGCGGACGGAAATTCGACGTTTGTCCGTGATTTGCGC 186 Query 667 CAGGTGGGGTTCAGGGATATAACGTCTTCTGTTGGACCTTGTGTGGATAACCC 719 |||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 185 CAGGTGGGGTTCGCGGATATAACGTCTTCTGTTGGACCTTGTGAGGATAACCC 133 >DcDTi12065.9 Unknown protein Length=2459 Score = 113 bits (61), Expect = 6e-24 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 214 TGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTTG 273 |||||||| ||||| ||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 2069 TGCCTCCAAAGAACTCTATGTTGTGTCAACTCCTCCCAGTCGTTCAGCCCCCATCTGTTG 2128 Query 274 CATAGTCTCTTCATCT 289 |||||||||||||||| Sbjct 2129 CATAGTCTCTTCATCT 2144 Score = 76.8 bits (41), Expect = 8e-13 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 291 TCGGCAACGGATTCACATATCCCTAATACGCCATCGGAGTGCGTGAGTGA 340 |||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 2058 TCGGCACGGGATTCACATATCCCTAATACGCCATCGGAGTGAGTGAGTGA 2009 >DcDTi10575.4 Unknown protein Length=1147 Score = 113 bits (61), Expect = 6e-24 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 214 TGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTTG 273 |||||||| ||||| ||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 859 TGCCTCCAAAGAACTCTATGTTGTGTCAACTCCTCCCAGTCGTTCAGCCCCCATCTGTTG 918 Query 274 CATAGTCTCTTCATCT 289 |||||||||||||||| Sbjct 919 CATAGTCTCTTCATCT 934 Score = 71.3 bits (38), Expect = 4e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 291 TCGGCAACGGATTCACATATCCCTAATACGCCATCGGAGTGCGTGAGTGA 340 |||||| |||||||||||||||||||| |||||||||||| |||||||| Sbjct 848 TCGGCACGGGATTCACATATCCCTAATATGCCATCGGAGTGAGTGAGTGA 799 >DcDTi02589.9 DNA repair protein RAD50 Length=5995 Score = 113 bits (61), Expect = 6e-24 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 214 TGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTTG 273 |||||||| ||||| ||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 5190 TGCCTCCAAAGAACTCTATGTTGTGTCAACTCCTCCCAGTCGTTCAGCCCCCATCTGTTG 5131 Query 274 CATAGTCTCTTCATCT 289 |||||||||||||||| Sbjct 5130 CATAGTCTCTTCATCT 5115 >DcDTr07113.1 Unknown protein Length=1465 Score = 108 bits (58), Expect = 3e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 214 TGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTTG 273 |||||||| ||||| ||||| ||||||| ||||||||||||||||| | ||||||||||| Sbjct 355 TGCCTCCAAAGAACTCTATGTTGTGTCAGCTCCTCCCAGTCGTTCAGCCCCCATCTGTTG 414 Query 274 CATAGTCTCTTCATCT 289 |||||||||||||||| Sbjct 415 CATAGTCTCTTCATCT 430 >DcDTr03200.2 Alpha-tocopherol transfer protein-like Length=1567 Score = 108 bits (58), Expect = 3e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 214 TGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTTG 273 |||||||| ||||| ||||| ||||||||||||||||||||||||| ||| ||||| ||| Sbjct 1421 TGCCTCCAAAGAACTCTATGTTGTGTCAACTCCTCCCAGTCGTTCAGCTCACATCTATTG 1480 Query 274 CATAGTCTCTTCATCT 289 |||||||||||||||| Sbjct 1481 CATAGTCTCTTCATCT 1496 >DcDTi02589.3 DNA repair protein RAD50 Length=2564 Score = 108 bits (58), Expect = 3e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 214 TGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTTG 273 |||||||| ||||| ||||| ||||||||||||||||| ||||||| | ||||||||||| Sbjct 1752 TGCCTCCAAAGAACTCTATGTTGTGTCAACTCCTCCCACTCGTTCAGCCCCCATCTGTTG 1693 Query 274 CATAGTCTCTTCATCT 289 |||||||||||||||| Sbjct 1692 CATAGTCTCTTCATCT 1677 >DcDTi00474.3 RNA-directed DNA polymerase from mobile element jockey Length=6301 Score = 108 bits (58), Expect = 3e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 214 TGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTTG 273 |||||||| ||||| ||||| |||||||||||| |||||||||||| | ||||||||||| Sbjct 2220 TGCCTCCAAAGAACTCTATGTTGTGTCAACTCCCCCCAGTCGTTCAGCCCCCATCTGTTG 2279 Query 274 CATAGTCTCTTCATCT 289 |||||||||||||||| Sbjct 2280 CATAGTCTCTTCATCT 2295 >DcDTr06303.1 Unknown protein Length=640 Score = 100 bits (54), Expect = 5e-20 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 214 TGCCTCCAGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTTG 273 |||||||| ||||| ||||| |||||||||||||||| |||||||| | ||||||||||| Sbjct 204 TGCCTCCAAAGAACTCTATGTTGTGTCAACTCCTCCCTGTCGTTCAGCCCCCATCTGTTG 145 Query 274 CATAGTCTCTTCATCT 289 |||||| ||||||||| Sbjct 144 CATAGT-TCTTCATCT 130 >DcDTr35392.1 Unknown protein Length=278 Score = 76.8 bits (41), Expect = 8e-13 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 291 TCGGCAACGGATTCACATATCCCTAATACGCCATCGGAGTGCGTGAGTGA 340 |||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 47 TCGGCACGGGATTCACATATCCCTAATACGCCATCGGAGTGAGTGAGTGA 96 >DcDTi06391.6 Unknown protein Length=2328 Score = 75.0 bits (40), Expect = 3e-12 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 291 TCGGCAACGGATTCACATATCCCTAATACGCCATCGGAGTGCGTGAGTG 339 |||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1467 TCGGCACGGGATTCACATATCCCTAATACGCCATCGGAGTGAGTGAGTG 1419 >DcDTi00474.4 RNA-directed DNA polymerase from mobile element jockey Length=4888 Score = 73.1 bits (39), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 5/75 (7%) Strand=Plus/Plus Query 216 CCTCC-AGAGAACGCTATGGTGTGTCAACTCCTCCCAGTCGTTCAACTCCCATCTGTT-G 273 ||||| ||||||| || || |||||||||||| |||||||||||| | |||||||||| | Sbjct 836 CCTCCAAGAGAACTCT-TGTTGTGTCAACTCCCCCCAGTCGTTCAGC-CCCATCTGTTTG 893 Query 274 CATAGTCTCTTCATC 288 | ||||||||||| Sbjct 894 CCC-GTCTCTTCATC 907 >DcDTr11052.1 Unknown protein Length=613 Score = 71.3 bits (38), Expect = 4e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 291 TCGGCAACGGATTCACATATCCCTAATACGCCATCGGAGTGCGTGAGTGA 340 |||||| |||||||||||||||||||||||||||| |||| |||||||| Sbjct 364 TCGGCATGGGATTCACATATCCCTAATACGCCATCGTAGTGAGTGAGTGA 315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106658292150 Database: Dcitri_transcriptome.fasta Posted date: Apr 30, 2019 10:57 AM Number of letters in database: 104,618,276 Number of sequences in database: 60,261 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5