BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM036690.1.1RNA-binding protein squid (AHRD V3.11 *** tr|A0A0...  261     5e-69
DcitrM047740.1.1RNA-binding protein squid (AHRD V3.11 *** tr|A0A0...  135     3e-31
DcitrM047720.1.1RNA-binding protein squid (AHRD V3.11 *** tr|A0A0...  87.9    9e-17


>DcitrM036690.1.1 RNA-binding protein squid (AHRD V3.11 *** tr|A0A067RDN2|A0A067RDN2_ZOONE). 
Similar to MCOT23404.0.CC XP_008469085.1. AED 
0.24
Length=1186

 Score = 261 bits (141),  Expect = 5e-69
 Identities = 141/141 (100%), Gaps = 0/141 (0%)
 Strand=Plus/Plus

Query  22    GCTGGTAGTTATGATGCCTATGCTACTGCATACCCAGGGTATGACTACAGTGCAATGGGT  81
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1046  GCTGGTAGTTATGATGCCTATGCTACTGCATACCCAGGGTATGACTACAGTGCAATGGGT  1105

Query  82    TATGCATACCCTGCAGCAGCCACTAGTTATGGAGGTGGCAAGTATCGAGAGGCTGCATAC  141
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1106  TATGCATACCCTGCAGCAGCCACTAGTTATGGAGGTGGCAAGTATCGAGAGGCTGCATAC  1165

Query  142   ACTAGACATGCTCCATACTAA  162
             |||||||||||||||||||||
Sbjct  1166  ACTAGACATGCTCCATACTAA  1186


>DcitrM047740.1.1 RNA-binding protein squid (AHRD V3.11 *** tr|A0A067RDN2|A0A067RDN2_ZOONE). 
Similar to MCOT23404.0.CC XP_017301767.1. AED 
0.05
Length=831

 Score = 135 bits (73),  Expect = 3e-31
 Identities = 121/144 (84%), Gaps = 3/144 (2%)
 Strand=Plus/Plus

Query  22   GCTGGTAGTTATGATGCCTATGCTACTGCATACCCAGGGTATGACTACAGTGCAATGGGT  81
            ||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||||||
Sbjct  688  GCTGGTAGTTATGATGCATATGCTACAGCATACCCTGGTTATGACTATAGTGCAATGGGT  747

Query  82   TATGCATACCCTGCAGCAGCCACTAGTTATGGAGGTGGCAAGTATCGAGAGGCTGCA---  138
            || |||||||||||| ||||  ||   |||||||| |||||||| |||||||| |||   
Sbjct  748  TACGCATACCCTGCACCAGCTGCTTCATATGGAGGAGGCAAGTACCGAGAGGCAGCAGCA  807

Query  139  TACACTAGACATGCTCCATACTAA  162
            ||| |  ||||||| || ||||||
Sbjct  808  TACCCACGACATGCACCCTACTAA  831


>DcitrM047720.1.1 RNA-binding protein squid (AHRD V3.11 *** tr|A0A067RDN2|A0A067RDN2_ZOONE). 
Similar to MCOT21147.0.CC XP_008469085.1. AED 
0.41
Length=822

 Score = 87.9 bits (47),  Expect = 9e-17
 Identities = 57/62 (92%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  22   GCTGGTAGTTATGATGCCTATGCTACTGCATACCCAGGGTATGACTACAGTGCAATGGGT  81
            ||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||||||
Sbjct  688  GCTGGTAGTTATGATGCATATGCTACAGCATACCCTGGTTATGACTATAGTGCAATGGGT  747

Query  82   TA  83
            ||
Sbjct  748  TA  749



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 25961002330


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5