BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitr_OGSv2.0_rna.fa 25,292 sequences; 49,157,538 total letters Query= Ds Length=580 Score E Sequences producing significant alignments: (Bits) Value DcitrM023800.1.1Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A08... 1072 0.0 DcitrM076455.1.1Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A29... 540 6e-153 DcitrM023795.1.1Broad-complex (AHRD V3.11 *-* tr|U3U9E0|U3U9E0_PS... 327 5e-89 >DcitrM023800.1.1 Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A088FQM8_DIPPU). AED 0.01 Length=1863 Score = 1072 bits (580), Expect = 0.0 Identities = 580/580 (100%), Gaps = 0/580 (0%) Strand=Plus/Plus Query 1 CAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 459 CAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGA 518 Query 61 ATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 ATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGAC 578 Query 121 TGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACATTAATCGCGAAAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 TGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACATTAATCGCGAAAC 638 Query 181 AGGGTCTCCTTACGGTAAGGTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 639 AGGGTCTCCTTACGGTAAGGTGCCAAGTGAGAAAAGTCATAGTGACAACGTCAGTGACTT 698 Query 241 ATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 699 ATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCACGTTCGCCATCGAAGTTC 758 Query 301 ACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATCTCCTCTTGCTCATGAAAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 ACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATCTCCTCTTGCTCATGAAAT 818 Query 361 CCCTTCTAAACGTGCCAAAACAAATGCCACACCTGAAGATCTGTCGTCCACTTCAACCAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 819 CCCTTCTAAACGTGCCAAAACAAATGCCACACCTGAAGATCTGTCGTCCACTTCAACCAT 878 Query 421 CAATGATTCAATCGCTGCTAACTACATCAATAAAACCCCCACACCTACACCTCCCATTCC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 CAATGATTCAATCGCTGCTAACTACATCAATAAAACCCCCACACCTACACCTCCCATTCC 938 Query 481 TGATCAAACACCTCCTGCCAAGCTTCCTAACTCCAATGCTTCCAGCAATGAAGACGAAGA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 939 TGATCAAACACCTCCTGCCAAGCTTCCTAACTCCAATGCTTCCAGCAATGAAGACGAAGA 998 Query 541 AGATGATAGAGACGAGGAAGAAAAAGTAGAGGACGAGAGA 580 |||||||||||||||||||||||||||||||||||||||| Sbjct 999 AGATGATAGAGACGAGGAAGAAAAAGTAGAGGACGAGAGA 1038 >DcitrM076455.1.1 Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A292GCW5_SCHGR). Similar to MCOT04683.2.CT XP_017300340.1. AED 0.36 Length=591 Score = 540 bits (292), Expect = 6e-153 Identities = 357/383 (93%), Gaps = 25/383 (7%) Strand=Plus/Plus Query 1 CAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12 CAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGA 71 Query 61 ATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGAC 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 ATTCATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGAC 131 Query 121 TGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACATTAATCGCGAAAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 TGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACATTAATCGCGAAAC 191 Query 181 AGGG------------------------TCTCCTTACGGTAAGGTGCCAAGTGAGAAAAG 216 |||| |||||||||||||||||||||||||||||||| Sbjct 192 AGGGGTAAGTCCCAGATTCAACTTTAGTTCTCCTTACGGTAAGGTGCCAAGTGAGAAAAG 251 Query 217 TCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATT 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 TCATAGTGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATT 311 Query 277 TAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCT 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 TAGTCACGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCT 371 Query 337 CTCATCTCCTCTTGCTCAT-GAA 358 ||||||||||||||||||| ||| Sbjct 372 CTCATCTCCTCTTGCTCATAGAA 394 >DcitrM023795.1.1 Broad-complex (AHRD V3.11 *-* tr|U3U9E0|U3U9E0_PSAHI). AED 0.22 Length=390 Score = 327 bits (177), Expect = 5e-89 Identities = 182/184 (99%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 1 CAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 CAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGA 263 Query 61 ATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGAC 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 264 ATTCATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCGTTTCT-AAGAC 322 Query 121 TGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACATTAATCGCGAAAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 TGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAGTACAGACATTAATCGCGAAAC 382 Query 181 AGGG 184 |||| Sbjct 383 AGGG 386 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26931507090 Database: Dcitr_OGSv2.0_rna.fa Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 49,157,538 Number of sequences in database: 25,292 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5