BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM023800.1.1Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A08...  427     2e-119
DcitrM076455.1.1Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A29...  255     9e-68 
DcitrM023795.1.1Broad-complex (AHRD V3.11 *-* tr|U3U9E0|U3U9E0_PS...  250     4e-66 


>DcitrM023800.1.1 Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A088FQM8_DIPPU). 
AED 0.01
Length=1863

 Score = 427 bits (231),  Expect = 2e-119
 Identities = 231/231 (100%), Gaps = 0/231 (0%)
 Strand=Plus/Plus

Query  1    GATGTCACTTTAGCTTGTGACGGCAAAAGCTTGAAAGCTCATCGGGTTGTATTGTCGGCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  GATGTCACTTTAGCTTGTGACGGCAAAAGCTTGAAAGCTCATCGGGTTGTATTGTCGGCA  417

Query  61   TGTAGTCCATATTTCAGGGAATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  TGTAGTCCATATTTCAGGGAATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTT  477

Query  121  CTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478  CTGCAAGATGTGGTCTGGGAAGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAA  537

Query  181  GTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGACTGCAGAAGTG  231
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  538  GTCAATGTTCATCAGAAGAATCTAACTTCGTTTCTAAAGACTGCAGAAGTG  588


>DcitrM076455.1.1 Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A292GCW5_SCHGR). 
Similar to MCOT04683.2.CT XP_017300340.1. AED 0.36
Length=591

 Score = 255 bits (138),  Expect = 9e-68
 Identities = 140/141 (99%), Gaps = 0/141 (0%)
 Strand=Plus/Plus

Query  91   ACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCAT  150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCAT  60

Query  151  GCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCG  210
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCCCTTGTAGAATTCATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTCG  120

Query  211  TTTCTAAAGACTGCAGAAGTG  231
            |||||||||||||||||||||
Sbjct  121  TTTCTAAAGACTGCAGAAGTG  141


>DcitrM023795.1.1 Broad-complex (AHRD V3.11 *-* tr|U3U9E0|U3U9E0_PSAHI). AED 0.22
Length=390

 Score = 250 bits (135),  Expect = 4e-66
 Identities = 140/142 (99%), Gaps = 1/142 (1%)
 Strand=Plus/Plus

Query  90   GACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCA  149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  GACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGAAGATCTTCA  251

Query  150  TGCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTC  209
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  252  TGCCCTTGTAGAATTCATTTACCATGGACAAGTCAATGTTCATCAGAAGAATCTAACTTC  311

Query  210  GTTTCTAAAGACTGCAGAAGTG  231
            |||||| |||||||||||||||
Sbjct  312  GTTTCT-AAGACTGCAGAAGTG  332


 Score = 84.2 bits (45),  Expect = 4e-16
 Identities = 45/45 (100%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  1    GATGTCACTTTAGCTTGTGACGGCAAAAGCTTGAAAGCTCATCGG  45
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  GATGTCACTTTAGCTTGTGACGGCAAAAGCTTGAAAGCTCATCGG  192



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 10049959710


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5