BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Csinensis_154_v1.fa
           12,574 sequences; 319,231,331 total letters



Query= Untitled_sequence

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

scaffold00085length=522755                                            686     0.0  
scaffold01661length=20644                                             159     8e-38
scaffold00064length=643170                                            115     2e-24


>scaffold00085 length=522755
Length=522755

 Score = 686 bits (371),  Expect = 0.0
 Identities = 371/371 (100%), Gaps = 0/371 (0%)
 Strand=Plus/Minus

Query  1      ATGGCCAATGATGACATGTATGATACATATGGATCATTAGATGAGGTTGAACTCTTCACA  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38421  ATGGCCAATGATGACATGTATGATACATATGGATCATTAGATGAGGTTGAACTCTTCACA  38362

Query  61     GATGCAGTAAAAAGGTGTAGCAATTAACATATTCGGGGATTAGATTATTAAGCACAATAC  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38361  GATGCAGTAAAAAGGTGTAGCAATTAACATATTCGGGGATTAGATTATTAAGCACAATAC  38302

Query  121    TTTTTATTAATAATATTTCTTGCTTTTATATGGCTGACCATTTTTTTCTTTTTTTCTTTT  180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38301  TTTTTATTAATAATATTTCTTGCTTTTATATGGCTGACCATTTTTTTCTTTTTTTCTTTT  38242

Query  181    TTAGGTGGGATACTGGGGCCATGGTGAAACTACCATGTTATATGCAGATTTGCTATTTGG  240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38241  TTAGGTGGGATACTGGGGCCATGGTGAAACTACCATGTTATATGCAGATTTGCTATTTGG  38182

Query  241    CTATGTTCAACTTTGGAAATGACTTGGCATATTATGATCTCAAAATTCATGGCCTGAATT  300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38181  CTATGTTCAACTTTGGAAATGACTTGGCATATTATGATCTCAAAATTCATGGCCTGAATT  38122

Query  301    TGCTGTCCAACATTAAGAATGAGGTCGCTAATAATGTGCTAGGATATTTTGAATTTTTCC  360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38121  TGCTGTCCAACATTAAGAATGAGGTCGCTAATAATGTGCTAGGATATTTTGAATTTTTCC  38062

Query  361    TTTTTCTTTAA  371
              |||||||||||
Sbjct  38061  TTTTTCTTTAA  38051


 Score = 399 bits (216),  Expect = 4e-110
 Identities = 318/365 (87%), Gaps = 16/365 (4%)
 Strand=Plus/Minus

Query  3      GGCCAATGATGACATGTATGATACATATGGATCATTAGATGAGGTTGAACTCTTCACAGA  62
              ||||| ||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||
Sbjct  41251  GGCCATTGATGACATGTATGATATATATGGATCATTAAATGAGCTTGAACTGTTCACAGA  41192

Query  63     TGCAGTAAAAAGGTGTAGCAATTAACATATTCGGGGATTAGATTATTAAGCACAATACTT  122
              ||||||||||||||| |  |||||||||||| || |||| ||||||||||||||  || |
Sbjct  41191  TGCAGTAAAAAGGTGCAATAATTAACATATTTGGAGATTGGATTATTAAGCACA-CACCT  41133

Query  123    TTTA-TTAATAATATTTCTTGCTTTTATATGGCTGACCATTTTTTTCTTTTTTTCTTTTT  181
              ||||  |||||||||||| | | |||||||||||||||        |    ||| |||||
Sbjct  41132  TTTAGCTAATAATATTTCCTACATTTATATGGCTGACC--------C----TTT-TTTTT  41086

Query  182    TAGGTGGGATACTGGGGCCATGGTGAAACTACCATGTTATATGCAGATTTGCTATTTGGC  241
               |||||| ||| ||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct  41085  CAGGTGGAATATTGGGGCCATGGAGAAACTGCCATATTATATGCAGATTTGCTATTTGGC  41026

Query  242    TATGTTCAACTTTGGAAATGACTTGGCATATTATGATCTCAAAATTCATGGCCTGAATTT  301
              ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct  41025  TATGTTCAACTTTGGAAATGACTTGGCATATGATGTTCTCAAAAATCATGGCCTGAATTT  40966

Query  302    GCTGTCCAACATTAAGAATGAGGTCGCTAATAATGTGCTAGGATATTTTGAATTTTTCCT  361
              ||||||  |||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct  40965  GCTGTCTTACATTAAGAATGAGGTCGCTAATAATATGCTAGGACATTTTGAATTTTTCAT  40906

Query  362    T-TTT  365
              | |||
Sbjct  40905  TCTTT  40901


>scaffold01661 length=20644
Length=20644

 Score = 159 bits (86),  Expect = 8e-38
 Identities = 90/92 (98%), Gaps = 0/92 (0%)
 Strand=Plus/Plus

Query  3      GGCCAATGATGACATGTATGATACATATGGATCATTAGATGAGGTTGAACTCTTCACAGA  62
              ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  20302  GGCCATTGATGACATGTATGATACATATGGATCATTAGATCAGGTTGAACTCTTCACAGA  20361

Query  63     TGCAGTAAAAAGGTGTAGCAATTAACATATTC  94
              ||||||||||||||||||||||||||||||||
Sbjct  20362  TGCAGTAAAAAGGTGTAGCAATTAACATATTC  20393


>scaffold00064 length=643170
Length=643170

 Score = 115 bits (62),  Expect = 2e-24
 Identities = 97/114 (85%), Gaps = 1/114 (1%)
 Strand=Plus/Plus

Query  219     TATATGCAGATTTGCTATTTGGCTATGTTCAACTTTGGAAATGACTTGGCATATTATGAT  278
               ||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||| ||| |
Sbjct  625856  TATATGCAGATTTGCTACTTGGCCATGTTTAACTTTGGAAATGAGTTGGCATATGATGTT  625915

Query  279     CTCAAAATTCATGGCCTGAATTTGCTGTCCAACATTAAGAATGAGGTC-GCTAA  331
                | |||||||||||||| |||   || ||| |||||||||| |||||  |||||
Sbjct  625916  ATGAAAATTCATGGCCTCAATACTCTATCCTACATTAAGAAAGAGGTGAGCTAA  625969



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 110022020415


  Database: Csinensis_154_v1.fa
    Posted date:  Jul 13, 2015  4:43 PM
  Number of letters in database: 319,231,331
  Number of sequences in database:  12,574



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5