BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM030860.1.1CG13315 (AHRD V3.11 -** tr|A0A0M4EPH0|A0A0M4EPH0_...  383     9e-106
DcitrM030840.1.1Unknown protein. AED 0.54                             167     1e-40 


>DcitrM030860.1.1 CG13315 (AHRD V3.11 -** tr|A0A0M4EPH0|A0A0M4EPH0_DROBS). AED 
0.06
Length=546

 Score = 383 bits (207),  Expect = 9e-106
 Identities = 342/409 (84%), Gaps = 2/409 (0%)
 Strand=Plus/Minus

Query  93   TTAAGGGGAACTAAAGGAGCAACTATTGGGGTTGTTCAAAAAAAAGTGGGAGGGGGGGGG  152
            ||||| || ||||||||||| |||||||| |||||||| |  ||||| ||||||||| | 
Sbjct  546  TTAAGCGGTACTAAAGGAGCGACTATTGGTGTTGTTCAGAGCAAAGTTGGAGGGGGGTGT  487

Query  153  GGGGTTCAAGTTCTTGCCAAACGCCAAAGTTCGGCCCGTCTTGAAAATCTTCGGGTTGAT  212
            | ||||| |||||||| |||||| || |||||||||||||||| | ||||||||| ||||
Sbjct  486  GTGGTTCGAGTTCTTGTCAAACGTCAGAGTTCGGCCCGTCTTGTAGATCTTCGGGCTGAT  427

Query  213  TTCTGACCCGGCCCCGGTTGTTTTATTTTTGGGGGCCCCCCAGAAAACGGTTTAAACCCC  272
            |||||| |||||||||||||| |||||||||| ||||| |||| | ||||||| |||| |
Sbjct  426  TTCTGATCCGGCCCCGGTTGTCTTATTTTTGGTGGCCCGCCAGTAGACGGTTTGAACCGC  367

Query  273  CGGGCGTCCTGCCCCCAGCCTGTTTGACCTACCAAAAATC-TAAAGGAAACTTTTTTCTA  331
            || |||||||||| |||| ||| |||| ||||| | |||| ||| |||| | ||||||| 
Sbjct  366  CGTGCGTCCTGCCACCAGTCTGCTTGAGCTACCGATAATCATAATGGAAGC-TTTTTCTG  308

Query  332  AACCAATAAAAAAATAACTCGGAAAAGGGGGTTTCCCAAGGATAAACCCTGGGACTCTGA  391
            || | || |||| || |||||| ||| |||||||||||||||| ||| ||||||||||||
Sbjct  307  AAGCGATGAAAAGATGACTCGGTAAATGGGGTTTCCCAAGGATGAACACTGGGACTCTGA  248

Query  392  ATTTCCTGCACCCTCTGAAATTCCCCTCCCCCAAACTCGCCTTCTTTAAGGATGGAAACT  451
            || |||||||| ||||| | ||| ||||| ||||||| | ||||||||| ||| | ||||
Sbjct  247  ATATCCTGCACACTCTGTAGTTCTCCTCCTCCAAACTTGTCTTCTTTAATGATTGGAACT  188

Query  452  ATTTTGAAAGTGGGTTCCCATTTCTTAAAATGGGGGTTGATGTTTTTGT  500
            ||||||| |||   || |||||||||   |||| |||||||||||||||
Sbjct  187  ATTTTGACAGTTATTTTCCATTTCTTGGGATGGTGGTTGATGTTTTTGT  139


>DcitrM030840.1.1 Unknown protein. AED 0.54
Length=610

 Score = 167 bits (90),  Expect = 1e-40
 Identities = 148/177 (84%), Gaps = 0/177 (0%)
 Strand=Plus/Minus

Query  324  TTTTTCTAAACCAATAAAAAAATAACTCGGAAAAGGGGGTTTCCCAAGGATAAACCCTGG  383
            ||||||| || | || |||| || |||||| ||| |||||||||||||||| ||| ||||
Sbjct  478  TTTTTCTGAAGCGATGAAAAGATGACTCGGTAAATGGGGTTTCCCAAGGATGAACGCTGG  419

Query  384  GACTCTGAATTTCCTGCACCCTCTGAAATTCCCCTCCCCCAAACTCGCCTTCTTTAAGGA  443
            |||||||||| |||||||| ||||| ||||| ||||| ||||||| | ||||||||| ||
Sbjct  418  GACTCTGAATATCCTGCACACTCTGTAATTCTCCTCCTCCAAACTTGTCTTCTTTAATGA  359

Query  444  TGGAAACTATTTTGAAAGTGGGTTCCCATTTCTTAAAATGGGGGTTGATGTTTTTGT  500
            | | ||| ||||||| ||| | || |||||||||   |||| |||||||||||||||
Sbjct  358  TTGGAACGATTTTGACAGTTGTTTTCCATTTCTTGGGATGGTGGTTGATGTTTTTGT  302


 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 63/74 (85%), Gaps = 0/74 (0%)
 Strand=Plus/Minus

Query  324  TTTTTCTAAACCAATAAAAAAATAACTCGGAAAAGGGGGTTTCCCAAGGATAAACCCTGG  383
            ||||||| || | || |||| || |||||| ||| |||||||||||||||| ||| ||||
Sbjct  583  TTTTTCTGAAGCGATGAAAAGATGACTCGGTAAATGGGGTTTCCCAAGGATGAACACTGG  524

Query  384  GACTCTGAATTTCC  397
            |||||||||| |||
Sbjct  523  GACTCTGAATATCC  510



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 23049488050


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5