BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Csinensis_154_v1.1.protein_annot.fasta
           46,147 sequences; 19,104,743 total letters



Query= 
Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

orange1.1g038314msimilar to AT5G54920.2                               424     3e-143
orange1.1g045896mCTC-interacting domain 4, similar to AT3G14010.3     74.3    8e-14 


>orange1.1g038314m similar to AT5G54920.2
Length=565

 Score = 424 bits (1090),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 270/572 (47%), Positives = 350/572 (61%), Gaps = 60/572 (10%)

Query  1    MGCRNREFSEDETC----SSTLSEALLFATMCLIGLPVEVHIKDGSVYSGIFHTACVENE  56
            MG + R  +E ET     SS+LSEALLFATMC+IGLPV+V+IKDGSVYSGIF+TA VE +
Sbjct  1    MGYKKR--TEQETTHSNNSSSLSEALLFATMCIIGLPVDVYIKDGSVYSGIFYTASVEKD  58

Query  57   YGVVLKKARMTKKGKRNVNVDDGVVIDTLIVLSGDLVQVVATEVILPAGSFSKSSAGCDN  116
            YG+VLKKA+M+KKGK N NV +G VI+TL++LS DLVQVVA  V LPA   + + AG D 
Sbjct  59   YGIVLKKAKMSKKGKSNANVANGTVIETLVILSADLVQVVAKGVQLPADGIAGNFAGDDV  118

Query  117  EAKAND-PTLLHPATAAKTCTESFKEGSQINQTSDLVQDQNGFARGSLPTVTGKLSDVRQ  175
             A A   P +    + AK    S     + NQ    V+++NG+  G  P    K  + + 
Sbjct  119  VAVAGTVPPIDGQISEAKRPIRSGLNKRR-NQKRISVRNENGYFHGDGPIKAEKEHEEQM  177

Query  176  LLRDNLENHQGDGHQERERINCKKLEDVSDATINWRQDPDNQLKKEQDDHGQEFDLHKGI  235
            L   N+ N     H +R+R++  K+E+ S  ++N RQ  D   + +QD   +  +LHKG 
Sbjct  178  LSLKNMRNAMEVEHGKRDRMDVTKIEEASVDSVNGRQVGDKSSQGQQDSCTRTTELHKGD  237

Query  236  NVDRVQSSLSS---------------------------------EKPST---ERPVSANT  259
            NVD VQ S ++                                 +KP     ERP SA+T
Sbjct  238  NVDGVQGSSTNLGACQGPVMPAEEHPNMAFKHSNGVSHDPAHELDKPENQCRERPTSADT  297

Query  260  TT-NAFSVGVSTSSLSSVDSSMDSCHSSMPLTTDIAP--------SHKEFKLNPRAKLFS  310
            ++  A    VSTSS    D +   C SS+  +T++ P        S KEFKLNP AK+FS
Sbjct  298  SSQGAARSTVSTSSTPVTDVTSGLCFSSLAASTEVVPLQSAPSNKSTKEFKLNPGAKIFS  357

Query  311  PSVANSMSAT-PAAPVAANVAYIPNNTPVLPVPVAQPEVEFSPFVPRSPVPAAKFVPYGN  369
            PS  N +SAT PA P A ++AY+P+N+PVLP+  AQ EV   P++  S VP +KFVPYG 
Sbjct  358  PSSVNPVSATSPAIPTATSMAYVPSNSPVLPIAAAQSEVGVGPYLSHSSVP-SKFVPYGT  416

Query  370  SIAGFGGNVAQFSQPMVGHVGTRTQPLRYVGQYPLQTGPTFGPPNSPAVMVGRF-GQLVY  428
              A  GG+ AQFSQP+VGH G R+QP+RY GQYP+Q GPT+  P+S AVM GR  GQLVY
Sbjct  417  LTAANGGSAAQFSQPIVGHAG-RSQPVRYAGQYPVQAGPTYVHPSSQAVMFGRVGGQLVY  475

Query  429  MQPLSHDLAHGTAVVSPVPPCPLLTAQPAQYPKHQGTAATQALQFCVPPPFMAGGHQPLA  488
            MQP+S+DL  G A +SPV   P LT    Q+PKHQG AA QALQ C+P P +AGG QP  
Sbjct  476  MQPVSNDL--GVAAMSPVSARPALTPHQVQFPKHQGNAAGQALQLCIPSPMVAGGLQPF-  532

Query  489  AVPNHIPILQPSFPLNRPMQVPGTNAFFNTKF  520
             VP+HIP+LQP  P NRP+ VPG+N  ++TKF
Sbjct  533  PVPSHIPVLQPPIPANRPIPVPGSNGLYSTKF  564


>orange1.1g045896m CTC-interacting domain 4, similar to AT3G14010.3
Length=520

 Score = 74.3 bits (181),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 40/101 (40%), Positives = 59/101 (58%), Gaps = 5/101 (5%)

Query  13   TCSSTLSEALLFATMCLIGLPVEVHIKDGSVYSGIFHTACVENEYGVVLKKARMTKKG--  70
            +C+ +  + LL+   CLIGL VEV +K GSVY+GIFH    E ++GV+LK AR+ K G  
Sbjct  57   SCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNF  116

Query  71   KRNVNVDDGVVI---DTLIVLSGDLVQVVATEVILPAGSFS  108
            +    V + V        I+ S +LVQV+A +V +    F+
Sbjct  117  RGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFA  157



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5850976782


  Database: Csinensis_154_v1.1.protein_annot.fasta
    Posted date:  Jul 15, 2015  4:50 PM
  Number of letters in database: 19,104,743
  Number of sequences in database:  46,147



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40