BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Csinensis_154_v1.fa 12,574 sequences; 319,231,331 total letters Query= Untitled_sequence Length=2266 Score E Sequences producing significant alignments: (Bits) Value scaffold00003length=4422589 950 0.0 >scaffold00003 length=4422589 Length=4422589 Score = 950 bits (514), Expect = 0.0 Identities = 514/514 (100%), Gaps = 0/514 (0%) Strand=Plus/Minus Query 1753 AGATGATTGTATCACTTGGTGCGGGTCCATGGGATGCTCTATTTGGTGGAGGCAATATAC 1812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825775 AGATGATTGTATCACTTGGTGCGGGTCCATGGGATGCTCTATTTGGTGGAGGCAATATAC 2825716 Query 1813 CTGCATTCGTTTTGGCATCCTTATCTGCTCTTGCCGGTGGTGTTGTTGCAACTCTCAAGC 1872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825715 CTGCATTCGTTTTGGCATCCTTATCTGCTCTTGCCGGTGGTGTTGTTGCAACTCTCAAGC 2825656 Query 1873 TGCCACATCTTTCAAGCAATTCGTTCAGGTCATCTGGTTTTCATTTTGGCTAATGACCAC 1932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825655 TGCCACATCTTTCAAGCAATTCGTTCAGGTCATCTGGTTTTCATTTTGGCTAATGACCAC 2825596 Query 1933 TGAGACATTGTTTTGGTGATAAACCAATCTGTATATCATTAAACCATAGGAGCATTACTT 1992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825595 TGAGACATTGTTTTGGTGATAAACCAATCTGTATATCATTAAACCATAGGAGCATTACTT 2825536 Query 1993 GGTGATTTTCTTCCAGAGCCCATCAGCCATCCCTTAAGGGACGACCAAGATAAGATCTTT 2052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825535 GGTGATTTTCTTCCAGAGCCCATCAGCCATCCCTTAAGGGACGACCAAGATAAGATCTTT 2825476 Query 2053 TGGCTTAACACCCTGCGGAAATCAATGGTTCTACCATTATAAATATGTATATTTTTACAT 2112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825475 TGGCTTAACACCCTGCGGAAATCAATGGTTCTACCATTATAAATATGTATATTTTTACAT 2825416 Query 2113 ATAAAAATTATTGAGTTGCTTATTCAAATTTATTCATTTTTCTCCCCGTCTGTGGGCACC 2172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825415 ATAAAAATTATTGAGTTGCTTATTCAAATTTATTCATTTTTCTCCCCGTCTGTGGGCACC 2825356 Query 2173 TGTATCTTATGTAGAGTGTAAATCATCTCTTCAAAAGCTATTATAGGAAACCTCATAATG 2232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2825355 TGTATCTTATGTAGAGTGTAAATCATCTCTTCAAAAGCTATTATAGGAAACCTCATAATG 2825296 Query 2233 CCATTCCTTCTCTAACTTAAAAGTTCCTTATTGT 2266 |||||||||||||||||||||||||||||||||| Sbjct 2825295 CCATTCCTTCTCTAACTTAAAAGTTCCTTATTGT 2825262 Score = 640 bits (346), Expect = 0.0 Identities = 350/352 (99%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 917 GGTGTTCCTGACGCTATGTGCTCTTGTGACCATATATTTTGCTGATGAGGTTCCACTAAC 976 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2827525 GGTGTTCCTGACGCTATGTGCTCTTGTGACCATATATTTTGCTGATGAGGTTCCACTAAC 2827466 Query 977 TGTAAATCAGCCCAATCATTTGACAGATTCTGCTCCTTTGTTGGATGATCCTCAACGAAA 1036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2827465 TGTAAATCAGCCCAATCATTTGACAGATTCTGCTCCTTTGTTGGATGATCCTCAACGAAA 2827406 Query 1037 TGCCATTTCCAAATCAAAACATGATATGCCAGCTGCTCCTAATGCCAATGGTAATAAAGT 1096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2827405 TGCCATTTCCAAATCAAAACATGATATGCCAGCTGCTCCTAATGCCAATGGTAATAAAGT 2827346 Query 1097 TGAGAGTGGCCATGAACGTGATGCCAATCTAAAGCATATCAGCAAAAAAGCTGAGGATAC 1156 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2827345 TGAGAGTGGCCATGAAAGTGATGCCAATCTAAAGCATATCAGCAAAAAAGCTGAGGATAC 2827286 Query 1157 AAATGGGAGCTTCAATGATGGACCTGGAGCTGTATTAGTCAATTTATTAACCAGTTTAAG 1216 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2827285 AAATGGGAGCTTCAATGATGGACCCGGAGCTGTATTAGTCAATTTATTAACCAGTTTAAG 2827226 Query 1217 GCATTTACCCCCTGCAATGCATGTAGTGCTTATTGTTATGGCTCTTACATGG 1268 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2827225 GCATTTACCCCCTGCAATGCATGTAGTGCTTATTGTTATGGCTCTTACATGG 2827174 Score = 433 bits (234), Expect = 3e-119 Identities = 234/234 (100%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1413 GTTGTTCTTGGCGTCAGTTCTTTCTTAATTGAACCTATGTGTCGGTGGATAGGTTCAAGG 1472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2826669 GTTGTTCTTGGCGTCAGTTCTTTCTTAATTGAACCTATGTGTCGGTGGATAGGTTCAAGG 2826610 Query 1473 CTTGTATGGGCAATCAGCAACTTTATTGTGTTTGCCTGTATGGCAACCACGGCTATCATT 1532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2826609 CTTGTATGGGCAATCAGCAACTTTATTGTGTTTGCCTGTATGGCAACCACGGCTATCATT 2826550 Query 1533 AGTGTGATATCTGTCAGAGAATATTCTGGAGGGATTGAACATGGAATTGGAGCGAATCAA 1592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2826549 AGTGTGATATCTGTCAGAGAATATTCTGGAGGGATTGAACATGGAATTGGAGCGAATCAA 2826490 Query 1593 GCAATCAAGGTGGCTTCCTTGGTTGTATTTACCCTGCTTGGTTTCCCTCTTGCT 1646 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2826489 GCAATCAAGGTGGCTTCCTTGGTTGTATTTACCCTGCTTGGTTTCCCTCTTGCT 2826436 Score = 261 bits (141), Expect = 1e-67 Identities = 145/147 (99%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 1268 GTTGTCCTGGTTCCCCTTCTTTCTTTTTGATACAGATTGGATGGGAAGAGAGGTTTATCA 1327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2826988 GTTGTCCTGGTTCCCCTTCTTTCTTTTTGATACAGATTGGATGGGAAGAGAGGTTTATCA 2826929 Query 1328 TGGGGATCCAAAGGGGAATGATCATGAAGTAAAGTTTTACGATCAAGGTGTCAGAGAAGG 1387 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2826928 TGGGGATCCGAAGGGGAATGACCATGAAGTAAAGTTTTACGATCAAGGTGTCAGAGAAGG 2826869 Query 1388 TGCATTTGGTTTGCTATTGAATTCAGT 1414 ||||||||||||||||||||||||||| Sbjct 2826868 TGCATTTGGTTTGCTATTGAATTCAGT 2826842 Score = 189 bits (102), Expect = 7e-46 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 458 GGTTCAACCTTGTGTTGGTATCTGGAGTGATAAATGCACATCAAAGTACGGAAGAAGACG 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2829320 GGTTCAACCTTGTGTTGGTATCTGGAGTGATAAATGCACATCAAAGTACGGAAGAAGACG 2829261 Query 518 GCCATTTATTCTTGCAGGATGTCTGATGATTTCTGTTGCTGT 559 |||||||||||||||||||||||||||||||||||||||||| Sbjct 2829260 GCCATTTATTCTTGCAGGATGTCTGATGATTTCTGTTGCTGT 2829219 Score = 183 bits (99), Expect = 3e-44 Identities = 103/105 (98%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 740 AGGTCCTGATCAACGGAATTCAGCAAATGCTATATTCTGCTCGTGGATGGCTGTTGGAAA 799 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2828612 AGGTCCTGATCAACGGAATTCAGCAAATGCTATATTCTGCTCATGGATGGCTGTTGGAAA 2828553 Query 800 CATCCTAGGGTTTTCTGCTGGTGCTAGTGGAAGTTGGCACAGATG 844 |||||||||||||||||||||||||||||||||||||||||| || Sbjct 2828552 CATCCTAGGGTTTTCTGCTGGTGCTAGTGGAAGTTGGCACAGGTG 2828508 Score = 163 bits (88), Expect = 4e-38 Identities = 90/91 (99%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 618 TGCAGCAAATTCAGAGGTACTCGAACAAGGGCAGCTTTTGTCTTTGTTATAGGGTTCTGG 677 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2828989 TGCAGCAAATTCAGAGGTACCCGAACAAGGGCAGCTTTTGTCTTTGTTATAGGGTTCTGG 2828930 Query 678 TTGCTGGATCTTGCAAACAATACAGTGCAAG 708 ||||||||||||||||||||||||||||||| Sbjct 2828929 TTGCTGGATCTTGCAAACAATACAGTGCAAG 2828899 Score = 150 bits (81), Expect = 3e-34 Identities = 81/81 (100%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 839 CAGATGGTTTCCTTTCCTCACGAGTAGGGCATGTTGCGCAGCTTGTGGGAATCTCAAGGC 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2828217 CAGATGGTTTCCTTTCCTCACGAGTAGGGCATGTTGCGCAGCTTGTGGGAATCTCAAGGC 2828158 Query 899 AGCATTTCTTGTGGCAGTGGT 919 ||||||||||||||||||||| Sbjct 2828157 AGCATTTCTTGTGGCAGTGGT 2828137 Score = 132 bits (71), Expect = 1e-28 Identities = 71/71 (100%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 390 CAGACACTTGGAATACAACATGCATTTTCTTCATTCATTTGGCTCTGTGGCCCTATTACA 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2830208 CAGACACTTGGAATACAACATGCATTTTCTTCATTCATTTGGCTCTGTGGCCCTATTACA 2830149 Query 450 GGCCTTGTGGT 460 ||||||||||| Sbjct 2830148 GGCCTTGTGGT 2830138 Score = 122 bits (66), Expect = 7e-26 Identities = 68/69 (99%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 1647 ATTACCTATAGTGTTCCCTTTGCTATCACAGCGGAGTTAACTGCTGATTCGGGTGGTGGC 1706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2826344 ATTACCTATAGTGTTCCCTTTGCTATCACAGCGGAGTTAACTGCTGATTCGGGTGGTGGC 2826285 Query 1707 CAAGGATTG 1715 ||||| ||| Sbjct 2826284 CAAGGTTTG 2826276 Score = 115 bits (62), Expect = 1e-23 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 558 GTGATAATTATCGGGTTTTCTGCAGACATTGGTTATATATTAGGCGATACAAAGGAGCAC 617 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2829137 GTGATAATTATCGGGTTTTCTGCAGACATTGGTTATATATTAGGCGATACGAAGGAGCAC 2829078 Query 618 TGCAG 622 ||||| Sbjct 2829077 TGCAG 2829073 Score = 86.1 bits (46), Expect = 9e-15 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 1709 AGGATTGGCAATAGGAGTTCTGAATCTCGCAATTGTTATTCCACAG 1754 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2826186 AGGATTGGCAATAGGAGTTCTGAATCTCGCAATTGTTATTCCACAG 2826141 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 713304774345 Database: Csinensis_154_v1.fa Posted date: Jul 13, 2015 4:43 PM Number of letters in database: 319,231,331 Number of sequences in database: 12,574 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5