BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: SS_all_quivered_hq.fasta
           42,166 sequences; 76,657,983 total letters



Query= Untitled_sequence

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

c230096/f2p8/1889isoform=c230096;full_length_coverage=2;non_full_...  248     4e-65
c229769/f4p8/1970isoform=c229769;full_length_coverage=4;non_full_...  248     4e-65


>c230096/f2p8/1889 isoform=c230096;full_length_coverage=2;non_full_length_coverage=8;isoform_length=1889
Length=1889

 Score = 248 bits (134),  Expect = 4e-65
 Identities = 136/137 (99%), Gaps = 0/137 (0%)
 Strand=Plus/Minus

Query  1     TGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1353  TGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCA  1294

Query  61    CGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATC  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1293  CGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATC  1234

Query  121   TCCTCTTGCTCATGAAA  137
             |||||||||||||| ||
Sbjct  1233  TCCTCTTGCTCATGTAA  1217


>c229769/f4p8/1970 isoform=c229769;full_length_coverage=4;non_full_length_coverage=8;isoform_length=1970
Length=1970

 Score = 248 bits (134),  Expect = 4e-65
 Identities = 136/137 (99%), Gaps = 0/137 (0%)
 Strand=Plus/Minus

Query  1     TGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1433  TGACAACGTCAGTGACTTATCACCCAGACCAGACACCTCCAGACATTCCTCATTTAGTCA  1374

Query  61    CGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATC  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1373  CGTTCGCCATCGAAGTTCACCCCTACTCTCTTCTCCACTCAACAATAAACACCTCTCATC  1314

Query  121   TCCTCTTGCTCATGAAA  137
             |||||||||||||| ||
Sbjct  1313  TCCTCTTGCTCATGTAA  1297



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 25176076389


  Database: SS_all_quivered_hq.fasta
    Posted date:  Feb 25, 2019  4:32 PM
  Number of letters in database: 76,657,983
  Number of sequences in database:  42,166



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5