BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= DsB

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM023800.1.1Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A08...  961     0.0   
DcitrM076455.1.1Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A29...  364     3e-100


>DcitrM023800.1.1 Broad-complex (AHRD V3.11 *-* tr|A0A088FQM8|A0A088FQM8_DIPPU). 
AED 0.01
Length=1863

 Score = 961 bits (520),  Expect = 0.0
 Identities = 520/520 (100%), Gaps = 0/520 (0%)
 Strand=Plus/Plus

Query  1     TCCAGCAATGAAGACGAAGAAGATGATAGAGACGAGGAAGAAAAAGTAGAGGACGAGAGA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  979   TCCAGCAATGAAGACGAAGAAGATGATAGAGACGAGGAAGAAAAAGTAGAGGACGAGAGA  1038

Query  61    GAAGATGATTTATCGGAGGTTGAGGAGCCACCTGTAGATTTTTCTATAACCCCAAATAGA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1039  GAAGATGATTTATCGGAGGTTGAGGAGCCACCTGTAGATTTTTCTATAACCCCAAATAGA  1098

Query  121   GAATCACCAGAAATCAAAAAGAAAAGGGACCGAACCCCTTCCAAGTCTCCTAATACGATC  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1099  GAATCACCAGAAATCAAAAAGAAAAGGGACCGAACCCCTTCCAAGTCTCCTAATACGATC  1158

Query  181   AAGTCCGAACCATCCGAGTGGAGTCTCATGCCTGCAGGCAACAACAACAACAACTATTCG  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1159  AAGTCCGAACCATCCGAGTGGAGTCTCATGCCTGCAGGCAACAACAACAACAACTATTCG  1218

Query  241   CTTACATCTCAGCATAATGATGACAGTAATGATTCTGTCAGTAATTCAACAAACTCCTAC  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1219  CTTACATCTCAGCATAATGATGACAGTAATGATTCTGTCAGTAATTCAACAAACTCCTAC  1278

Query  301   AGGAACCACTTGGATAGGTATGATAGTTTGCATGATGACAGTTTGCAAGGAGCACATAGT  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1279  AGGAACCACTTGGATAGGTATGATAGTTTGCATGATGACAGTTTGCAAGGAGCACATAGT  1338

Query  361   TATTTGGATAGTAAAATATTTGCTGCTGCTGGAGCCTCTTTCAATTTTAGTATGGCAGCC  420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1339  TATTTGGATAGTAAAATATTTGCTGCTGCTGGAGCCTCTTTCAATTTTAGTATGGCAGCC  1398

Query  421   GCTTTAGCCGCAGATTCATTAGCAGGATTAAATCATCAACATAATTCAGGGAATACAGGC  480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1399  GCTTTAGCCGCAGATTCATTAGCAGGATTAAATCATCAACATAATTCAGGGAATACAGGC  1458

Query  481   ACTTTAGATTTGACTGGAGGTCCTTCTTCACAAGGTTTAG  520
             ||||||||||||||||||||||||||||||||||||||||
Sbjct  1459  ACTTTAGATTTGACTGGAGGTCCTTCTTCACAAGGTTTAG  1498


>DcitrM076455.1.1 Broad-Complex (AHRD V3.11 *-* tr|A0A292GCW5|A0A292GCW5_SCHGR). 
Similar to MCOT04683.2.CT XP_017300340.1. AED 0.36
Length=591

 Score = 364 bits (197),  Expect = 3e-100
 Identities = 200/201 (99%), Gaps = 1/201 (0%)
 Strand=Plus/Plus

Query  120  AGAATCACCAGAAATCAAAAAGAAAAGGGACCGAACCCCTTCCAAGTCTCCTAATACGAT  179
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  391  AGAATCACCAGAAATCAAAAAGAAAAGGGA-CGAACCCCTTCCAAGTCTCCTAATACGAT  449

Query  180  CAAGTCCGAACCATCCGAGTGGAGTCTCATGCCTGCAGGCAACAACAACAACAACTATTC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  450  CAAGTCCGAACCATCCGAGTGGAGTCTCATGCCTGCAGGCAACAACAACAACAACTATTC  509

Query  240  GCTTACATCTCAGCATAATGATGACAGTAATGATTCTGTCAGTAATTCAACAAACTCCTA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  GCTTACATCTCAGCATAATGATGACAGTAATGATTCTGTCAGTAATTCAACAAACTCCTA  569

Query  300  CAGGAACCACTTGGATAGGTA  320
            |||||||||||||||||||||
Sbjct  570  CAGGAACCACTTGGATAGGTA  590



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 24019992810


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5