BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitri_transcriptome.fasta
           60,261 sequences; 104,618,276 total letters



Query= Untitled_sequence

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcDTr00929.6Longitudinals lacking protein, isoforms H/M/V             556     6e-158


>DcDTr00929.6 Longitudinals lacking protein, isoforms H/M/V
Length=1341

 Score = 556 bits (301),  Expect = 6e-158
 Identities = 301/301 (100%), Gaps = 0/301 (0%)
 Strand=Plus/Plus

Query  1     CTCAGCTTTTGAAAATCTCAGGGACGATGAAGATTTCATAGATGTCACTTTAGCTTGTGA  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  728   CTCAGCTTTTGAAAATCTCAGGGACGATGAAGATTTCATAGATGTCACTTTAGCTTGTGA  787

Query  61    CGGCAAAAGCTTGAAAGCTCATCGGGTTGTATTGTCGGCATGTAGTCCATATTTCAGGGA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  788   CGGCAAAAGCTTGAAAGCTCATCGGGTTGTATTGTCGGCATGTAGTCCATATTTCAGGGA  847

Query  121   ATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGA  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  848   ATTGTTGAAGACAACGCCTTGCAAACACCCCGTGATAGTTCTGCAAGATGTGGTCTGGGA  907

Query  181   AGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAA  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  908   AGATCTTCATGCCCTTGTAGAATTTATTTACCATGGACAAGTCAATGTTCATCAGAAGAA  967

Query  241   TCTAACTTCGTTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAG  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  968   TCTAACTTCGTTTCTAAAGACTGCAGAAGTGTTACGCGTATCTGGTCTTACGCAAAACAG  1027

Query  301   T  301
             |
Sbjct  1028  T  1028



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 28458843276


  Database: Dcitri_transcriptome.fasta
    Posted date:  Apr 30, 2019 10:57 AM
  Number of letters in database: 104,618,276
  Number of sequences in database:  60,261



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5