BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= NODE_6494

Length=730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM077165.1.1UPF0160 protein MYG1, mitochondrial (AHRD V3.11 *...  281     5e-75


>DcitrM077165.1.1 UPF0160 protein MYG1, mitochondrial (AHRD V3.11 *** tr|A0A0A9X3A9|A0A0A9X3A9_LYGHE). 
Similar to MCOT16439.0.CC XP_008475476.1. 
AED 0.00| InterPro:IPR003226,Pfam:PF03690
Length=3231

 Score = 281 bits (152),  Expect = 5e-75
 Identities = 156/158 (99%), Gaps = 0/158 (0%)
 Strand=Plus/Minus

Query  44    ACAATGACGGCTTACACAAGCACCAGTCAGGATTTGGTTCAATGCGATAAGAATCGAAGC  103
             ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2277  ACAGTGACGGCCTACACAAGCACCAGTCAGGATTTGGTTCAATGCGATAAGAATCGAAGC  2218

Query  104   TCTCTCAACACTTGTCTGTCCAAACTACCCGATATGCTGCACCAGACAGAACTTCAGGGT  163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2217  TCTCTCAACACTTGTCTGTCCAAACTACCCGATATGCTGCACCAGACAGAACTTCAGGGT  2158

Query  164   ATCCCGAGCTCCAAGAAAGATGTGGATGTCGCATGCAG  201
             ||||||||||||||||||||||||||||||||||||||
Sbjct  2157  ATCCCGAGCTCCAAGAAAGATGTGGATGTCGCATGCAG  2120



Lambda      K        H
    1.34    0.623     1.13 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 34210292790


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5