BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitri_transcriptome.fasta 60,261 sequences; 104,618,276 total letters Query= 3546 Length=1038 Score E Sequences producing significant alignments: (Bits) Value DcDTi11994.120S-pre-rRNA D-site endonuclease nob1 1812 0.0 >DcDTi11994.1 20S-pre-rRNA D-site endonuclease nob1 Length=1943 Score = 1812 bits (981), Expect = 0.0 Identities = 1029/1050 (98%), Gaps = 12/1050 (1%) Strand=Plus/Plus Query 1 ATGGACAAGCGGCTGCTGATCCAGTCCTGTGTGATGCTCCTGCTGACTCACTACCGATCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 ATGGACAAGCGGCTGCTGATCCAGTCCTGTGTGATGCTCCTGCTGACTCACTACCGATCA 555 Query 61 GTAGACATGGCCAGCATCACCAAGTACGACCAAAGTCAGCACGGGACGTACAACGTGCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 GTAGACATGGCCAGCATCACCAAGTACGACCAAAGTCAGCACGGGACGTACAACGTGCAG 615 Query 121 ATTCACTTAAAGAACCTGGAAGTGATTGCCATTCTGGACGACACGATGCTTTCCGGTGGC 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 616 ATTCACTTAAAGAACCTGGAAGTGATTGCCATTCTGGACGACACGATGTTTTCCGGTGGC 675 Query 181 GCGGAAAGCGATATATATGATTACGACTACACCGACGTTTCGGCCGCCTTCGAGAAGCCG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 GCGGAAAGCGATATATATGATTACGACTACACCGACGTTTCGGCCGCCTTCGAGAAGCCG 735 Query 241 TCCAACAGCACCAACTCCACCCTCCCTTCCACACCACCCACCACCACCCCACACCCACCC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 736 TCCAACAGCACCAACTCCACCCTCCCTTCCACACCACCCACCACCACCCCACACCCACCC 795 Query 301 ACCGTAGTCACCACCCCGACAGTAACAACTGCTCCGACTTTGGGGTCTACTACTTACGCG 360 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 796 ACCGTAGTCACCACCCCGACAGTAACAACTGCTCCGACTTTGGGGTCTACCACTTATGCG 855 Query 361 TCCGCAAACAAGACCACCGCCAATCGATTGACGACCATCATCAACACGAAAGTGACGCCT 420 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 856 TCCGCAAACAAGACCACCGCCAATCGATTGACGACCATCGTCAACACGAAAGTGACGCCT 915 Query 421 CGACCGACCTCTGGCGGCCAAAAAACGAACGTCACGGCCGCCCAAAGTGGCGGAAAACCG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 CGACCGACCTCTGGCGGCCAAAAAACGAACGTCACGGCCGCCCAAAGTGGCGGAAAACCG 975 Query 481 GCGGTGAATGCGGGTGGGTCCAGCACGAGCAAATACAACGCGACTAATGTTCTCAATGTG 540 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 976 ACGGTGAATGCGGGTGGGTCCAGCACGAGCAAATACAACGCGACTAATGTACTCAATGTG 1035 Query 541 GTGGTACCTGCCACAGCCACCAAAGCCCCTCATAACAAAATATCAGAGGCTGATCATCCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1036 GTGGTACCTGCCACAGCCACCAAAGCCCCTCATAACAAAATATCAGAGGCTGATCATCCT 1095 Query 601 GCCCCTGCCAAGGTGACGACACCTCAGCCTGCCACCACAGCTGGTACCACAATAGTGACA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1096 GCCCCTGCCAAGGTGACGACACCTCAGCCTGCCACCACAGCTGGTACCACAATAGTGACA 1155 Query 661 CCCCCCAGTGACGGCGCCGATTACACCCTCATGGACACAATCTCCGTGCCGGTCGAAATA 720 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1156 CCCCCCAGCGACGGCGCCGATTACACCCTCATGGACACAATCTCCGTGCCGGTCGAAATA 1215 Query 721 CAACAGCCGCCCTCCGCTCACCCCTCGCCCATGCTGATACGGAAGTGCGCCCCTGGATAT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1216 CAACAGCCGCCCTCCGCTCACCCCTCGCCCATGCTGATACGGAAGTGCGCCCCTGGATAT 1275 Query 781 TTCCGTGACTCGAGCGGCAAATGCCGGCGCATCCGAAAACCGCACCTACC---------- 830 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1276 TTCCGTGACTCGAGCGGCAAATGCCGGCGCATCCGAAAACCGCACCTACCTTTGATCTAC 1335 Query 831 --GTTTCTACAGATGGTCCACACACCCGGAGTCATCAAATCTTTCCAAACCGAATCCTCG 888 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1336 AGGTTTCTACAGATGGTGCACACACCCGGAGTCATCAAATCTTTCCAAACCGAATCCTCG 1395 Query 889 ACCAAGAAAATGATGGTCCCAGAGGTGGCACATTCCAAGATGCCCAAAGAAGAGAAGCTG 948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1396 ACCAAGAAAATGATGGTCCCAGAGGTGGCACATTCCAAGATGCCCAAAGAAGAGAAGCTG 1455 Query 949 GTCCTGGAGTTGGCCAACAAGTTAGCGAAAGAAGAAGTGGCTGCTAAGATGGCAAAAGAG 1008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1456 GTCCTGGAGTTGGCCAACAAGTTAGCGAAAGAAGAAGTGGCTGCTAAGATGGCAAAGGAG 1515 Query 1009 GACCTGGGAAATGTTACTATGAAAGAGTAA 1038 |||||||||||||||||||||||||||||| Sbjct 1516 GACCTGGGAAATGTTACTATGAAAGAGTAA 1545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104288107880 Database: Dcitri_transcriptome.fasta Posted date: Apr 30, 2019 10:57 AM Number of letters in database: 104,618,276 Number of sequences in database: 60,261 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5