BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Dcitr_OGSv2.0_rna.fa
           25,292 sequences; 49,157,538 total letters



Query= Untitled_sequence

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

DcitrM030860.1.1CG13315 (AHRD V3.11 -** tr|A0A0M4EPH0|A0A0M4EPH0_...  388     2e-107
DcitrM030840.1.1Unknown protein. AED 0.54                             172     2e-42 


>DcitrM030860.1.1 CG13315 (AHRD V3.11 -** tr|A0A0M4EPH0|A0A0M4EPH0_DROBS). AED 
0.06
Length=546

 Score = 388 bits (210),  Expect = 2e-107
 Identities = 349/418 (83%), Gaps = 2/418 (0%)
 Strand=Plus/Minus

Query  113  TTAAGGGGAACTAAAGGAGCAACTATTGGGGTTGTTCAAAAAAAAGTGGGAGGGGGGGGG  172
            ||||| || ||||||||||| |||||||| |||||||| |  ||||| ||||||||| | 
Sbjct  546  TTAAGCGGTACTAAAGGAGCGACTATTGGTGTTGTTCAGAGCAAAGTTGGAGGGGGGTGT  487

Query  173  GGGGTTCAAGTTCTTGCCAAACGCCAAAGTTCGGCCCGTCTTGAAAATCTTCGGGTTGAT  232
            | ||||| |||||||| |||||| || |||||||||||||||| | ||||||||| ||||
Sbjct  486  GTGGTTCGAGTTCTTGTCAAACGTCAGAGTTCGGCCCGTCTTGTAGATCTTCGGGCTGAT  427

Query  233  TTCTGACCCGGCCCCGGTTGTTTTATTTTTGGGGGCCCCCCAGAAAACGGTTTAAACCCC  292
            |||||| |||||||||||||| |||||||||| ||||| |||| | ||||||| |||| |
Sbjct  426  TTCTGATCCGGCCCCGGTTGTCTTATTTTTGGTGGCCCGCCAGTAGACGGTTTGAACCGC  367

Query  293  CGGGCGTCCTGCCCCCAGCCTGTTTGACCTACCAAAAATC-TAAAGGAAACTTTTTTCTA  351
            || |||||||||| |||| ||| |||| ||||| | |||| ||| |||| | ||||||| 
Sbjct  366  CGTGCGTCCTGCCACCAGTCTGCTTGAGCTACCGATAATCATAATGGAAGC-TTTTTCTG  308

Query  352  AACCAATAAAAAAATAACTCGGAAAAGGGGGTTTCCCAAGGATAAACCCTGGGACTCTGA  411
            || | || |||| || |||||| ||| |||||||||||||||| ||| ||||||||||||
Sbjct  307  AAGCGATGAAAAGATGACTCGGTAAATGGGGTTTCCCAAGGATGAACACTGGGACTCTGA  248

Query  412  ATTTCCTGCACCCTCTGAAATTCCCCTCCCCCAAACTCGCCTTCTTTAAGGATGGAAACT  471
            || |||||||| ||||| | ||| ||||| ||||||| | ||||||||| ||| | ||||
Sbjct  247  ATATCCTGCACACTCTGTAGTTCTCCTCCTCCAAACTTGTCTTCTTTAATGATTGGAACT  188

Query  472  ATTTTGAAAGTGGGTTCCCATTTCTTAAAATGGGGGTTGATGTTTTTGTTGAGGAATT  529
            ||||||| |||   || |||||||||   |||| ||||||||||||||||| || |||
Sbjct  187  ATTTTGACAGTTATTTTCCATTTCTTGGGATGGTGGTTGATGTTTTTGTTGGGGTATT  130


>DcitrM030840.1.1 Unknown protein. AED 0.54
Length=610

 Score = 172 bits (93),  Expect = 2e-42
 Identities = 155/186 (83%), Gaps = 0/186 (0%)
 Strand=Plus/Minus

Query  344  TTTTTCTAAACCAATAAAAAAATAACTCGGAAAAGGGGGTTTCCCAAGGATAAACCCTGG  403
            ||||||| || | || |||| || |||||| ||| |||||||||||||||| ||| ||||
Sbjct  478  TTTTTCTGAAGCGATGAAAAGATGACTCGGTAAATGGGGTTTCCCAAGGATGAACGCTGG  419

Query  404  GACTCTGAATTTCCTGCACCCTCTGAAATTCCCCTCCCCCAAACTCGCCTTCTTTAAGGA  463
            |||||||||| |||||||| ||||| ||||| ||||| ||||||| | ||||||||| ||
Sbjct  418  GACTCTGAATATCCTGCACACTCTGTAATTCTCCTCCTCCAAACTTGTCTTCTTTAATGA  359

Query  464  TGGAAACTATTTTGAAAGTGGGTTCCCATTTCTTAAAATGGGGGTTGATGTTTTTGTTGA  523
            | | ||| ||||||| ||| | || |||||||||   |||| ||||||||||||||||| 
Sbjct  358  TTGGAACGATTTTGACAGTTGTTTTCCATTTCTTGGGATGGTGGTTGATGTTTTTGTTGG  299

Query  524  GGAATT  529
            || |||
Sbjct  298  GGTATT  293


 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 63/74 (85%), Gaps = 0/74 (0%)
 Strand=Plus/Minus

Query  344  TTTTTCTAAACCAATAAAAAAATAACTCGGAAAAGGGGGTTTCCCAAGGATAAACCCTGG  403
            ||||||| || | || |||| || |||||| ||| |||||||||||||||| ||| ||||
Sbjct  583  TTTTTCTGAAGCGATGAAAAGATGACTCGGTAAATGGGGTTTCCCAAGGATGAACACTGG  524

Query  404  GACTCTGAATTTCC  417
            |||||||||| |||
Sbjct  523  GACTCTGAATATCC  510



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 24990497570


  Database: Dcitr_OGSv2.0_rna.fa
    Posted date:  Mar 4, 2018 10:37 PM
  Number of letters in database: 49,157,538
  Number of sequences in database:  25,292



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5