TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Candidatus_Liberibacter_asiaticus_psy62_genome.fasta
           1 sequences; 1,227,328 total letters



Query= 3260

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.115    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 15134665


Query= 3100

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.121    0.317    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 22497310


Query= 4105

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|346722692|ref|NC_012985.3|  Candidatus Liberibacter asiaticus ...  300     1e-94


>gi|346722692|ref|NC_012985.3| Candidatus Liberibacter asiaticus str. psy62 chromosome, complete 
genome
Length=1227328

 Score = 300 bits (768),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 147/257 (57%), Positives = 191/257 (74%), Gaps = 2/257 (1%)
 Frame = -2

Query  1        MYRFVLTIFFISTLSFLASCKHQNQPSQNFIFPSISDKKYQRNLYEKAVELLENKNFEKA  60
                +Y+F LTIFF   + FL   + Q+  S++    S++D +YQR +YEKAV  L+ +NF KA
Sbjct  1173912  LYKFALTIFFSIAVCFLVGWERQS--SRDVYLDSVTDVRYQREVYEKAVLFLKEQNFSKA  1173739

Query  61       SKEFYSFSKELPFNDVARKALLMSAFAKYKTKKYLSSASLGEEYIAQYPNSEDIDYVYYL  120
                 + F   S++ PF  VARK+LLMSAF +Y   KY  +ASLGEEYI QYP S+++DYVYYL
Sbjct  1173738  YEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL  1173559

Query  121      VGMSYAQKIRNVSYDQHPTQSMVQYMSEILEKYPKSPYSKGAQFYLSIGRNQLAGQEMYV  180
                VGMSYAQ IR+V YDQ  T+ M+QYMS I+E+Y  SPY KGA+FY+++GRNQLA +E+ +
Sbjct  1173558  VGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEI  1173379

Query  181      GRYYLKNKEYVSAILRFQLVIANYFDTEQVEEAMARLVEAYFMLGLVDEATSMASVIQQK  240
                GRYYLK  EYV+AI RFQLV+ANY D E  EEAMARLVEAY  L L+DEA  + S+IQ++
Sbjct  1173378  GRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQER  1173199

Query  241      YPKGLWSDYVSDLVQLN  257
                YP+G W+ YV  LV+ N
Sbjct  1173198  YPQGYWARYVETLVK*N  1173148



Lambda      K        H        a         alpha
   0.318    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 74444006


  Database: Candidatus_Liberibacter_asiaticus_psy62_genome.fasta
    Posted date:  Jul 20, 2015  1:36 PM
  Number of letters in database: 1,227,328
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40