BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Dcitr_OGSv2.0_rna.fa 25,292 sequences; 49,157,538 total letters Query= 3546 Length=1344 Score E Sequences producing significant alignments: (Bits) Value DcitrM002135.1.1Unknown protein. AED 0.00 2416 0.0 >DcitrM002135.1.1 Unknown protein. AED 0.00 Length=1818 Score = 2416 bits (1308), Expect = 0.0 Identities = 1332/1344 (99%), Gaps = 0/1344 (0%) Strand=Plus/Plus Query 1 ATGAAAATATGTTTGATTCTCAGCCTTGCTGTGTTTCTGAACCACGCGGTCACATGTCAG 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 297 ATGAAAATATGTTTGATTCTCAGCCTTGGTGTGTTTCTGAACCACGCGGTCACATGTCAG 356 Query 61 CGACAGTTCTACATCTCAGACACGCGGTATACTCCCAAAAATCGTTACAGGGTGGGTCAG 120 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 357 CGACAGTTCTACATCCCAGACACGCGGTATACTCCCAAACATCGTTACAGGGTGGATCAG 416 Query 121 GGTCGGGGTGAACATCGTCGCTCCCTCTCTTCATTACCCGAGCCCCAGTACCCATCGGAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GGTCGGGGTGAACATCGTCGCTCCCTCTCTTCATTACCCGAGCCCCAGTACCCATCGGAC 476 Query 181 CCATTCGACCCCACCTACCCCATGGGGACCTACCCTGTGGGTAAAGAGTACCCCGGGTTC 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 CCCTTCGACCCCACCTACCCCATGGGGACCTACCCTGTGGGTAAAGAGTACCCCGGGTTC 536 Query 241 CCAAAGGTCCAGCGTCTACCTGTACATACAACGCAGGATCTTCATTACCCCGGCGACCAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 CCAAAGGTCCAGCGTCTACCTGTACATACAACGCAGGATCTTCATTACCCCGGCGACCAA 596 Query 301 GTCCTCTACCCGTCACAGTCACTCGGCTACAAACAGTCCCCGTACGACATCCCCCAGCGT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 GTCCTCTACCCGTCACAGTCACTCGGCTACAAACAGTCCCCGTACGACATCCCCCAGCGT 656 Query 361 CGCGCCTTCCAGGAGAGCCCCTACCCTTCCTTCCAAGCGTTCGAGGACGCCTACCCCGCC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 CGCGCCTTCCAGGAGAGCCCCTACCCTTCCTTCCAAGCGTTCGAGGACGCCTACCCCGCC 716 Query 421 TTCTCCCCCACCCGACAGACGCTACAAGGCCACCCCTACCACTCACAGCGGATTCGCATT 480 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 717 TTCTCCCCCACACGACAGACGCTACAAGGCCACCCGTACCACTCACAGCGGATTCGCATC 776 Query 481 AAGCATAGCTTCCCCGCGGACAAGCATGTGGATGCCGCCTCACCCCAACTCAACCAATAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AAGCATAGCTTCCCCGCGGACAAGCATGTGGATGCCGCCTCACCCCAACTCAACCAATAC 836 Query 541 ATCCCGGACTTCGCGGACACACCGCATCTCAATCGCCTGCTTCCCAACTTCGGCGGGGCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 ATCCCGGACTTCGCGGACACACCGCATCTCAATCGCCTGCTTCCCAACTTCGGCGGGGCT 896 Query 601 AGACTTGGCGGCGGGCAGATGAGCGACGCCGCGCACCTCACTCAGTTCCTCCCCGGGTAC 660 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 897 AGACTTGGCGGCGGGCAGATGAGTGACGCCGCGCACCTCACTCAGTTCCTCCCCGGGTAC 956 Query 661 GGGGGAGGTCGGAACCTCGCCGCGCAGATGGTGGACCCCGCGCTTGTGAACCATTTGCTT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 GGGGGAGGTCGGAACCTCGCCGCGCAGATGGTGGACCCCGCGCTTGTGAACCATTTGCTT 1016 Query 721 CCTGGGTACGGGGGAGCGAATAAACTCGCGGGTCAGATTGGTGATTCCGCGCCTCAGATG 780 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CCTGGGTATGGGGGAGCGAATAAACTCGCGGGTCAGATTGGTGATTCCGCGCCTCAGATG 1076 Query 781 AGGAAGTTGCTACCCCAGTATGATGCGATGGACTCGCGGATGATGCAGTATGCCCAGCAA 840 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 AGGAAGTTGCTGCCCCAGTATGATGCGATGGACTCGCGGATGATGCAGTATGCCCAGCAA 1136 Query 841 CCTAACACGATAGTTGTGGAGAAGAAGGTGCCCATGCCTTACAAGGTTCAGATCGAGAAG 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 CCTAACACGATAGTTGTGGAGAAGAAGGTGCCCATGCCTTACAAGGTTCAGATCGAGAAG 1196 Query 901 CCATACTTCGTGGAGGTAACCAAACACATTGCAGTCCCCGTAGCAGTCCCAGTACCCAAA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 CCATACTTCGTGGAGGTAACCAAACACATTGCAGTCCCCGTAGCAGTCCCAGTACCCAAA 1256 Query 961 CCTATGCCTTATCCCGTGCACAAGTATATTCAAATACCCAAGTATATTCAAGTACCTCAA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 CCTATGCCTTATCCCGTGCACAAGTATATTCAAATACCCAAGTATATTCAAGTACCTCAA 1316 Query 1021 TCTAGTGTAGACCACACGGGCGGCACTCAGGAACGAAGCACCACCGCCTCCCTCTCTCCT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 TCTAGTGTAGACCACACGGGCGGCACTCAGGAACGAAGCACCACCGCCTCCCTCTCTCCT 1376 Query 1081 CGCCCTACCCGACCTCCCTCCCCTCCCTCCTACTCTACCACCCCCCACCCCTACTCCTTC 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 CGCCCTACCCGACCTCCCTCCCCTCCCTCCTACTCTACCACCCCCCACCCCTACTCCTTC 1436 Query 1141 GACTACCCCTACTACACCCCAGAACATCTACCTCAGGTGTCTATCCATCCCAATGGGGTG 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 GACTACCCCTACTACACCCCAGAACATCTACCTCAGGTGTCTATCCATCCCAATGGGGTG 1496 Query 1201 TCACCTTCCCCTACACCCTCACAAGATTATATGCTACAACTACTGGAACAGAAATCTCAC 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 TCACCTTCCCCTACACCCTCACAAGATTATATGCTACAACTACTGGAACAGAAATCTCAC 1556 Query 1261 CAGGGCGCGCTTACACTAGAGGAACTACAGCAACTTATGCAATCCGAGAAACTGCCGGAC 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 CAGGGCGCGCTTACACTAGAGGAACTACAGCAACTTATGCAATCCGAGAAACTGCCGGAC 1616 Query 1321 GATCCGTTTATTATCAAAAAATAG 1344 |||||||||||||||||||||||| Sbjct 1617 GATCCGTTTATTATCAAAAAATAG 1640 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63922928828 Database: Dcitr_OGSv2.0_rna.fa Posted date: Mar 4, 2018 10:37 PM Number of letters in database: 49,157,538 Number of sequences in database: 25,292 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5